Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00234 ATGTACGCATCGTCCTCCGTTTCGATTGCAGCCCTTACCTGCCCACGCTTGCTTCAGCCTCCCTTGAAGCCTGTCGCGTGCTCTCAAGCTTCTTTCAACCGCCGCCATCTGATTACCACTCTGGTCTCTGTCTCTACCCCTTCTTTCATCGATTTCTGTCTGCCCTGTTCTTCTGATTTTGTTGCTCTTCCTGTCGCTGAAGCTCGTGGTCTGTTCCAGATGCCCCCTGTTCGTCTCGTCAATCGGTACTTTCTGGTGAGGGCCGGAGAGTCAGAATTCGATAGCTTTGGTATAATTAACACAAACCCAGTTGCAAAAACATCAGTTGATAGCGGATTGTCTGAGGAAGGGAAGAAGCAAACTGTTAAAGCGGCTTTCAAATTGAAAGAAATGGGGGCTTGTGACAATGGCTGCTGGATTTGGCCCTCTATTACGCAGAGAGCTTATCAAGCAGCTGAGATTATTGCATCAGTTAATGGTGTGAATCGAAGTTATATAGTTCCTGAATATAGTTTTCTTGATGCCCGTGGGCTTGGAGCTTATGAAGGCAAGAGATTGGAGTCTGTTTCAGAAGTATATGCTTCAGATACCATCTCTTCACGGATCAAACCTCCTCCAATTGATGATGGTACCCCAAACGAGAGCGTATCCGATGTGTTCGTTCGTGTAACGCAACTGATGTCGATTCTCGAAACGCAATACTCTGGTGATACTATCATCATTGTGTCGCCAGATTCTGATAATTTGACAGTTCTTCAAGCTGGTTTAATCGGCCTTGACTTGCGAAGGCACCATGATCTTTCCTTTGCACCCGGGGAGGTTCGCTTTGTTGATATAAGTAGTATCCCTTCCTATAAGCAACCAGCTTCAGCTGTTTATAAATGTTTAAACCTTCCTAATTGTAACTGA 909 45.65 MYASSSVSIAALTCPRLLQPPLKPVACSQASFNRRHLITTLVSVSTPSFIDFCLPCSSDFVALPVAEARGLFQMPPVRLVNRYFLVRAGESEFDSFGIINTNPVAKTSVDSGLSEEGKKQTVKAAFKLKEMGACDNGCWIWPSITQRAYQAAEIIASVNGVNRSYIVPEYSFLDARGLGAYEGKRLESVSEVYASDTISSRIKPPPIDDGTPNESVSDVFVRVTQLMSILETQYSGDTIIIVSPDSDNLTVLQAGLIGLDLRRHHDLSFAPGEVRFVDISSIPSYKQPASAVYKCLNLPNCN 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1340456 1341920 + Cp4.1LG20g02290.1 Cpe20g00234 486863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00234 302 Pfam Histidine phosphatase superfamily (branch 1) 84 278 IPR013078 -
Cpe20g00234 302 SUPERFAMILY Phosphoglycerate mutase-like 82 280 IPR029033 -
Cpe20g00234 302 Gene3D - 81 289 IPR029033 -
Cpe20g00234 302 PANTHER PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN 23 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00234 - - - cmax:111495032 582.408
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g734 . . . . Bpe12g00592 . . . Cmo13g00922 . . . . . . Cpe20g00234 . . . . . . . . . . . . . . . . Cone16ag0109 . . Lsi02g00365 Csa01g00842 Chy12g01275 Cme12g01701 Blo13g00055 . . . . . . . . . . Cma13g00894 . Car13g00735 . . . Bhi08g01596 . . Lac10g0438 Hepe07g2233 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012999 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00234 Cpe_Chr20 FPKM 23.971888 28.775276 27.262211 28.098248 5.970468 6.4979 8.593757 7.359575 9.150664 14.095214