Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe20g00235 | ATGGCTATTCGAGGAGTCGATTTCAAATGGTACGATGGGTTCTTCTTGTCAATGCTTGCTACTAGTATAATCATTGTGAGTATCAATTGGAGAAGGTACAATACCTGTAGATATCCTTTGCACATATGGATTGTGGTTGATTATACCTCTGTGTTTGCTTTTCGCCTTCTGCTGTTCATAGATAATGCACTTTCAGCTGGAATGGGATTAGATTTCGGATGGCAGCAGCGATATGCTCGATTCTGTGGACGAGTTGTGGTTCTTTCTATTCTATCTCTATTGCTGTACCCCTTTCTATGTGCGTGGACTGTAATTGGGACTCTGTGGTTTAGAGATGCTAAAGATTGTCTGCCTGAAGAAGGACAGAAATGGGGCTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCGTTGCCTGCTTGTCAATTGGAAAGTGGTTAGCGCGTCGACAAGCTCACTTGTTCCGTGCCCAACAAGGCATACCGGTGTCGGAATATGGGGTACTGGTTGATATGATTAGAGTTCCTGATTGGGCATTTGAAGCTGCAGGATTGGAAACACGAGGCATTGGCCAAGATGCTACTGGGTACCATCCCGGGTTGTTCTTAACCTCGGCTCAGGACCTTCCAAAGTTCAGGCTAAAGGCTGTCCCAACAGATTGCAGTGAATGCCCCATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGTATGCCATGTGCTCACAATTTCCACGTCGAATGTATCGACGAGTGGCTTCGTCTGAACGTTAAATGTCCTCGATGTCGCTCCTCCGTCTTCCCAAATCTCGACCTCAGCGCTCTTTCAAACCTACATTCAGACACAGAACAAACATCTGCCATTGCTTTCGTAACAAGCCAACCTTCAAGTCTGTCGAGATCAACTCCGAGCCACCGCGCATCTCAGACCGAAAACACAGCAGGCCTCTATACCGACACGACCTTAGATGCCATGGAGAACGGAAGCTCACCCATTTTGAACCATCTTAACCAGAATTGCTCAGCCCCTTAA | 1044 | 46.93 | MAIRGVDFKWYDGFFLSMLATSIIIVSINWRRYNTCRYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCVACLSIGKWLARRQAHLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGLETRGIGQDATGYHPGLFLTSAQDLPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSAIAFVTSQPSSLSRSTPSHRASQTENTAGLYTDTTLDAMENGSSPILNHLNQNCSAP | 347 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 1342753 | 1345854 | + | Cp4.1LG20g02320.1 | Cpe20g00235 | 486864 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe20g00235 | 347 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 332 | IPR044793 | GO:0004842|GO:0010182 | |
| Cpe20g00235 | 347 | SUPERFAMILY | RING/U-box | 215 | 275 | - | - | |
| Cpe20g00235 | 347 | Pfam | Ring finger domain | 225 | 267 | IPR001841 | - | |
| Cpe20g00235 | 347 | ProSiteProfiles | Zinc finger RING-type profile. | 226 | 267 | IPR001841 | - | |
| Cpe20g00235 | 347 | SMART | ring_2 | 226 | 266 | IPR001841 | - | |
| Cpe20g00235 | 347 | MobiDBLite | consensus disorder prediction | 297 | 321 | - | - | |
| Cpe20g00235 | 347 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 332 | - | - | |
| Cpe20g00235 | 347 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 272 | IPR013083 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe18g00841 | Cpe20g00235 | CCT | |
| Cpe09g01032 | Cpe20g00235 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe20g00235 | Cpe-Chr20:1342753 | Cpe08g00516 | Cpe-Chr8:3336974 | 6.17E-13 | dispersed | |
| Cpe18g00841 | Cpe-Chr18:7755223 | Cpe20g00235 | Cpe-Chr20:1342753 | 5.38E-147 | wgd | |
| Cpe20g00235 | Cpe-Chr20:1342753 | Cpe09g01032 | Cpe-Chr9:9074155 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe20g00235 | K16284 | - | csv:101222360 | 628.632 |