Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00241 ATGGGTTTAACTTCTCTACAAGTCTGCATGGACTCCTCTGATTGGCTGCAGGGCACCATTAACGAGGAGTCTGGCATGGATTCTTCGTCGCTATCAGGGGACATGCTGTCATGTTCAAGGCCGCTGACAGAGAGGAGGCTTAGACCACCACATGATCAAGCACTGAAATGCCCAAGATGTGACTCAACGCACACCAAATTTTGCTACTACAACAATTACAGCCTCACCCAGCCGCGTTACTTTTGCAAGACATGTCGTAGGTACTGGACCAAAGGCGGCACTCTTCGTAACATCCCTGTCGGTGGTGGCTGTCGAAAGAACAAGAAAGTTGCCACTACTAAGAAATCCAATGACCCACAACACCAACAGCCACAAAATCAACAACCCATCTCCCAAAATCACCACCAAGGCTCTTCTTCTTCTTCTGCCCATCACATTCACAACCCCACTGATCTCCATCTCTCATTTCCCGACCAAGTACAATTCCCTCATTTCAACCATCTCATTGGAACAACCCCAAGTTTCATGGACGCCAAATACACCATTGGAATGCTTGAAAGTCACCACCAACATCACACTACTCGACCCATTGATTTCATGGACACCAAAATGGACGCCATTGTTGGGAATGCTCATTACCCTACAAACCCTGATCACTTAGCCATGGTTGGTGGGCTAGCTGGAGATCACATCGCCGCCGCCGGGCATACTCTGTCGCCGAGTTTCCATGGCCTTTGCTCCCCTTATGGGCTGTCACTCGATGGGAACACCATTGGACAAGGACTGATGATTCCTTATGATCAGCATGAACCAAATGAGGAGCCAAATGCAATGGATGTGAAACCAAATACAAAGCTTCTGGCTTTGGAATGGCAAGATCAGGGATGTTCAGACAAAGTTGAATCGTATGGATACATAAATGGAATTGGGTCGTCTTGGAATGGGATGATGAATGGATATGGACCATCAACAACGAACCCATTGGTGTAA 990 47.58 MGLTSLQVCMDSSDWLQGTINEESGMDSSSLSGDMLSCSRPLTERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVATTKKSNDPQHQQPQNQQPISQNHHQGSSSSSAHHIHNPTDLHLSFPDQVQFPHFNHLIGTTPSFMDAKYTIGMLESHHQHHTTRPIDFMDTKMDAIVGNAHYPTNPDHLAMVGGLAGDHIAAAGHTLSPSFHGLCSPYGLSLDGNTIGQGLMIPYDQHEPNEEPNAMDVKPNTKLLALEWQDQGCSDKVESYGYINGIGSSWNGMMNGYGPSTTNPLV 329
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
20 1369484 1371377 + Cp4.1LG20g02280.1 Cpe20g00241 486870
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00241 329 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Cpe20g00241 329 PANTHER - 11 323 - -
Cpe20g00241 329 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 323 IPR045174 GO:0003700|GO:0006355
Cpe20g00241 329 MobiDBLite consensus disorder prediction 116 148 - -
Cpe20g00241 329 MobiDBLite consensus disorder prediction 100 152 - -
Cpe20g00241 329 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Cpe20g00241 329 Pfam Dof domain, zinc finger 52 109 IPR003851 GO:0003677|GO:0006355
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe18g00719 Cpe20g00241 CCT
Cpe04g01443 Cpe20g00241 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00869 Cpe-Chr5:5708348 Cpe20g00241 Cpe-Chr20:1369484 4.02E-37 dispersed
Cpe09g01027 Cpe-Chr9:9041052 Cpe20g00241 Cpe-Chr20:1369484 4.38E-179 dispersed
Cpe10g00531 Cpe-Chr10:3110980 Cpe20g00241 Cpe-Chr20:1369484 2.33E-35 dispersed
Cpe13g00322 Cpe-Chr13:2812456 Cpe20g00241 Cpe-Chr20:1369484 2.26E-35 dispersed
Cpe14g00027 Cpe-Chr14:155290 Cpe20g00241 Cpe-Chr20:1369484 1.26E-32 dispersed
Cpe16g00560 Cpe-Chr16:6397056 Cpe20g00241 Cpe-Chr20:1369484 3.04E-37 dispersed
Cpe20g00241 Cpe-Chr20:1369484 Cpe20g00813 Cpe-Chr20:7378828 1.22E-33 dispersed
Cpe20g00240 Cpe-Chr20:1367964 Cpe20g00241 Cpe-Chr20:1369484 6.95E-113 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51108 PF02701 zf-Dof 3.30E-33 No_clan Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00241 - - csv:101223232 526.168