Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe20g00241 | ATGGGTTTAACTTCTCTACAAGTCTGCATGGACTCCTCTGATTGGCTGCAGGGCACCATTAACGAGGAGTCTGGCATGGATTCTTCGTCGCTATCAGGGGACATGCTGTCATGTTCAAGGCCGCTGACAGAGAGGAGGCTTAGACCACCACATGATCAAGCACTGAAATGCCCAAGATGTGACTCAACGCACACCAAATTTTGCTACTACAACAATTACAGCCTCACCCAGCCGCGTTACTTTTGCAAGACATGTCGTAGGTACTGGACCAAAGGCGGCACTCTTCGTAACATCCCTGTCGGTGGTGGCTGTCGAAAGAACAAGAAAGTTGCCACTACTAAGAAATCCAATGACCCACAACACCAACAGCCACAAAATCAACAACCCATCTCCCAAAATCACCACCAAGGCTCTTCTTCTTCTTCTGCCCATCACATTCACAACCCCACTGATCTCCATCTCTCATTTCCCGACCAAGTACAATTCCCTCATTTCAACCATCTCATTGGAACAACCCCAAGTTTCATGGACGCCAAATACACCATTGGAATGCTTGAAAGTCACCACCAACATCACACTACTCGACCCATTGATTTCATGGACACCAAAATGGACGCCATTGTTGGGAATGCTCATTACCCTACAAACCCTGATCACTTAGCCATGGTTGGTGGGCTAGCTGGAGATCACATCGCCGCCGCCGGGCATACTCTGTCGCCGAGTTTCCATGGCCTTTGCTCCCCTTATGGGCTGTCACTCGATGGGAACACCATTGGACAAGGACTGATGATTCCTTATGATCAGCATGAACCAAATGAGGAGCCAAATGCAATGGATGTGAAACCAAATACAAAGCTTCTGGCTTTGGAATGGCAAGATCAGGGATGTTCAGACAAAGTTGAATCGTATGGATACATAAATGGAATTGGGTCGTCTTGGAATGGGATGATGAATGGATATGGACCATCAACAACGAACCCATTGGTGTAA | 990 | 47.58 | MGLTSLQVCMDSSDWLQGTINEESGMDSSSLSGDMLSCSRPLTERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVATTKKSNDPQHQQPQNQQPISQNHHQGSSSSSAHHIHNPTDLHLSFPDQVQFPHFNHLIGTTPSFMDAKYTIGMLESHHQHHTTRPIDFMDTKMDAIVGNAHYPTNPDHLAMVGGLAGDHIAAAGHTLSPSFHGLCSPYGLSLDGNTIGQGLMIPYDQHEPNEEPNAMDVKPNTKLLALEWQDQGCSDKVESYGYINGIGSSWNGMMNGYGPSTTNPLV | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 1369484 | 1371377 | + | Cp4.1LG20g02280.1 | Cpe20g00241 | 486870 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe20g00241 | 329 | ProSiteProfiles | Zinc finger Dof-type profile. | 55 | 109 | IPR003851 | GO:0003677|GO:0006355 | |
Cpe20g00241 | 329 | PANTHER | - | 11 | 323 | - | - | |
Cpe20g00241 | 329 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 11 | 323 | IPR045174 | GO:0003700|GO:0006355 | |
Cpe20g00241 | 329 | MobiDBLite | consensus disorder prediction | 116 | 148 | - | - | |
Cpe20g00241 | 329 | MobiDBLite | consensus disorder prediction | 100 | 152 | - | - | |
Cpe20g00241 | 329 | ProSitePatterns | Zinc finger Dof-type signature. | 57 | 93 | IPR003851 | GO:0003677|GO:0006355 | |
Cpe20g00241 | 329 | Pfam | Dof domain, zinc finger | 52 | 109 | IPR003851 | GO:0003677|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe18g00719 | Cpe20g00241 | CCT | |
Cpe04g01443 | Cpe20g00241 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe05g00869 | Cpe-Chr5:5708348 | Cpe20g00241 | Cpe-Chr20:1369484 | 4.02E-37 | dispersed | |
Cpe09g01027 | Cpe-Chr9:9041052 | Cpe20g00241 | Cpe-Chr20:1369484 | 4.38E-179 | dispersed | |
Cpe10g00531 | Cpe-Chr10:3110980 | Cpe20g00241 | Cpe-Chr20:1369484 | 2.33E-35 | dispersed | |
Cpe13g00322 | Cpe-Chr13:2812456 | Cpe20g00241 | Cpe-Chr20:1369484 | 2.26E-35 | dispersed | |
Cpe14g00027 | Cpe-Chr14:155290 | Cpe20g00241 | Cpe-Chr20:1369484 | 1.26E-32 | dispersed | |
Cpe16g00560 | Cpe-Chr16:6397056 | Cpe20g00241 | Cpe-Chr20:1369484 | 3.04E-37 | dispersed | |
Cpe20g00241 | Cpe-Chr20:1369484 | Cpe20g00813 | Cpe-Chr20:7378828 | 1.22E-33 | dispersed | |
Cpe20g00240 | Cpe-Chr20:1367964 | Cpe20g00241 | Cpe-Chr20:1369484 | 6.95E-113 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51108 | PF02701 | zf-Dof | 3.30E-33 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe20g00241 | - | - | csv:101223232 | 526.168 |