Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00243 ATGGAAGACCCCAAAACCCCAGAAACCCTAAAAGTTCAAAGTCCTGCGATTGAAACTAGCGAGGATATTTCGGGGTTTTCTGGATTGGCTGATTTGAGTGCGGGATTAACGGCGGAGATTCTGGTAGCTGAAAATGGCGTAGTGGTTAGTGATTGCAGTAACGAGGCTGAGATTAGCAATGTCGAATTGAGGAATGAGGAAGATGAGAAGAGAATAGATGGTTCTGAGAGAGAAATTTTGGATGCTGGTGTGGTTGCAGCAGGTGATGCTGAAGCAGACGATGGTAATGGTGGTGAGGCTGAGAATGACCAGAAAGAAGGCAACACTGTGGAATTAGGTGGTGTGTCTACAGGTGAGAACTTGGAAGTCCCCGGAGATGGTATGCCACTTGCAATGGACTTCTCGAACGTTCAGCAGGAAGAACCAGAACCTTCCAAGTCGATAGGAATGGAAGAAATGTCGAAAGAAGCTGGAGATGCAAAACAGGTTATTGAAAATGGTCAAGAGAACAAATTTTCGGTTGGTGATGTGATATGGGTCAAGACGAAAAGTCAGACATGGTGGCCTGGGAAGATATATCCTTCGGATGCAGCAGAGAGTGACATAAGTAGCCGGGATGATAGTCTATTAGTTGGCTATTTTGGAAGCAGCCACATGACATGGTGCTCTCCATCTCAGTTGATACCCTTCGCTGATAACTTTGAGCAAATGTCTGGGAAATCCAAGTCTCGAAGCTTCCTCGGAGCCGTAGAGAAAGCCGTGGATGAGTTTGGTAGGTGTGTGAAGTTGGAGATGTCGTGTTCGTGTATTTCAGAACGAAATTACCCTTTAGAAGGTAATGGTGAATCAAAGGATGCAGCTTCCTTGCGTGGGCGCAAGTCTAGTCTACTTGCTAAATATTCTATTGCTCAGTATGAACCCGAAACATTCCTAGCACGTGTTAAGGGTCTTGCAGAGACTGTTTCCCTATGTGGAGCGTTTGAGTTGAGTATCCTATACAATCAATTAGCAGCTTTTCAAAGCTCAATAGGGCACCAGCAGTTACCTTTGCATCAACTCAGGGAAACTCATGATGATGAAGACAATGAGGTGGGCAAATCAGTGAGAAAAAGCAAAGTTGGTGTTACAGTTGCAGATGAAGAACAGGTAGAAGGGGGCACACAGAACTCGCCATTAGAGACACCATCCATAGGATCAGATGTTCTGTGCGAAAAGATGGAAGGGAAGAATGAAGATCCTAACAAGGTTCTAGATGGAAGCATGGAAGCTAGGAAAAGGAGCTCCAGAAGAATGGCAATTTCTAATGGAGGAATAGAACCAAAATCTGCAAAGAGAAAAGGACATGAAAAGATTGAAGATTTTGAATCTAGTGAAATGGATTCCTCAATCAAGGGAGAGGTGATCAATCCATTAACAGATGAAATTAAGGATTCTGGTGTAGAAAACTTCGATGATGAGAGCAAAGGAACGTCGGAAAAGAGGTCTGAGACACGAGAGCGGAAGAAGAGCAAGTATTTATCTTTTCCATATATAAACTGGGGGCAGAAAGGTATGCCAGCTGAAACAGATGATATTAGAGCTCTTAAAATTTATGGCGAAGATGCGGATGAATATGCAGTCGAGGGCCAGAATGAAACCCCATTGCTATCTAAATGCAGTGGCAAGTTCTGGAAGAAGTGGTACCGGAATATCACCAGTGGGAGCGATGTCGCTGATAATCAAGAGTTGATGAGTGCATCACCAGCTGAGTTTCTCTCTGAGCTTCATTTTACTGCTGTAGATTGTCTTTATCCAAACGAAATCAGCAACTTTGATGCGGTTGCGCAGTTCTTCTCCAGGTTTAGAATTTTGATGTTTCATGATGAATCTGTCAATGGTGGCCAAAATGAGGCAATGGCAGCCGATTTATTTTTTCTTGGGGGAAAGGTGTCGGAGGTTAAGCATCCTTCCTCGACGCCTAAATCTGGGATCAAGAAAAGAAAAGGTCAGGCAATGAGATCCGAACTAATCTCTGGTGATGTGGGTTTGACTGGACAACCTGAAATATGTCCTGTAGGAGATGCACAGAAAAAAAGCCCTCTGACTTCCAATGTTAAGTCAAAAAAAGATGGAGATAGCTTGGGGAAATTGAAGACTAAATCCCTTTCTGCCTTGTCAGATGTGAACATTAACATAGATTCACCAGAGCTCGAACCTCTCTCACCCAATGGTATAACGAAGCGGAGGAAGCGAAAGAACAATGAATCACATCCGCAGAGTAAACCAACAATGGAGATACCAGATTTAAATGGAAGCGGTACCGTATCTGGCGTGTTGGTGGATAATCGGCAGGCTGTGAGCCATGTCATCTCCCAACAAAAGTCTGAGCCAAAGAAGAGAAGGAAACTTGGAGCTACTAAGGAGGAGCATTCAAAGGTGTCTACTGAATTCATGGATGTGAATAACAGCAATAAACCTGGTTCGTTTTTCATTGATCTACAGGTCACAGCTCCACAACCACTTGATGTAATTGTAGAGCAAAATAAAGTGGATTTTGCAGGAGCGCCTAACCAGTCAGTGAATTATCAGACAATTGGCCAAGATCAGAGCAAGACTGGGGGCAAAAAGCGAAAGAGGAAGGAGAAGGCTATCTTATCCTCAGATATACCTGATTTAAATCGAATGGGTATTGACATTAGTCAGGGAAAAGATTCCCAATTGACTAAACCTAAGAGGAGGAGGAGGAGGAGAAAAGGTGAAGCTAGTTTGAACCATCCAAATCCTTCTGACAGCAGATCATATATTTATAACAGAGTCGAAACTGATGGTGGAGGCTTAGGATCTCTTCTTCTTTTAACTTTCTCTTCAGAAGCTCCCTTACCTCCCCGGGAGCAAGTTATTAGTACGTTTAGCCAGTTTGGATCATTGAAGGAATCAGAGATTCAGTTCAAGGATTCCACTGTTGAGATAGTTTTCCTCCGAAGCGCCGACGCCATGGAAGCAGTTCGGAGTTTAAAGAAGAACAACATTTTTGGCCCAACTCTTTTAAAATATCAGCTCTATCATCTCTCGGTTCCCCCCAAGACATCGGACTCAGACCGGGCTTGCACGGCACTGGCGTATCCAGCTTCTGAGGGCACTCTGAACCCATCAAAATCAGGTGAATTAGGAAATCAAGCAGGTGAGACACCGCCTATAGAGTTTATAAGGAAGAATCTTCAGATGATGACGTCAATGTTGGAGAAGTCAGGAGACAATCTCTCCCCAGACATGAGAGCCAAATTGGAGAGCGATATTGAAGGCCTCCTCAAGAAGGTGAGTTCCATGGCGGGCCCTTCCTCAACGTAA 3327 44.09 MEDPKTPETLKVQSPAIETSEDISGFSGLADLSAGLTAEILVAENGVVVSDCSNEAEISNVELRNEEDEKRIDGSEREILDAGVVAAGDAEADDGNGGEAENDQKEGNTVELGGVSTGENLEVPGDGMPLAMDFSNVQQEEPEPSKSIGMEEMSKEAGDAKQVIENGQENKFSVGDVIWVKTKSQTWWPGKIYPSDAAESDISSRDDSLLVGYFGSSHMTWCSPSQLIPFADNFEQMSGKSKSRSFLGAVEKAVDEFGRCVKLEMSCSCISERNYPLEGNGESKDAASLRGRKSSLLAKYSIAQYEPETFLARVKGLAETVSLCGAFELSILYNQLAAFQSSIGHQQLPLHQLRETHDDEDNEVGKSVRKSKVGVTVADEEQVEGGTQNSPLETPSIGSDVLCEKMEGKNEDPNKVLDGSMEARKRSSRRMAISNGGIEPKSAKRKGHEKIEDFESSEMDSSIKGEVINPLTDEIKDSGVENFDDESKGTSEKRSETRERKKSKYLSFPYINWGQKGMPAETDDIRALKIYGEDADEYAVEGQNETPLLSKCSGKFWKKWYRNITSGSDVADNQELMSASPAEFLSELHFTAVDCLYPNEISNFDAVAQFFSRFRILMFHDESVNGGQNEAMAADLFFLGGKVSEVKHPSSTPKSGIKKRKGQAMRSELISGDVGLTGQPEICPVGDAQKKSPLTSNVKSKKDGDSLGKLKTKSLSALSDVNINIDSPELEPLSPNGITKRRKRKNNESHPQSKPTMEIPDLNGSGTVSGVLVDNRQAVSHVISQQKSEPKKRRKLGATKEEHSKVSTEFMDVNNSNKPGSFFIDLQVTAPQPLDVIVEQNKVDFAGAPNQSVNYQTIGQDQSKTGGKKRKRKEKAILSSDIPDLNRMGIDISQGKDSQLTKPKRRRRRRKGEASLNHPNPSDSRSYIYNRVETDGGGLGSLLLLTFSSEAPLPPREQVISTFSQFGSLKESEIQFKDSTVEIVFLRSADAMEAVRSLKKNNIFGPTLLKYQLYHLSVPPKTSDSDRACTALAYPASEGTLNPSKSGELGNQAGETPPIEFIRKNLQMMTSMLEKSGDNLSPDMRAKLESDIEGLLKKVSSMAGPSST 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1372941 1376267 - Cp4.1LG20g02430.1 Cpe20g00243 486872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00243 1108 ProSiteProfiles PWWP domain profile. 174 233 IPR000313 -
Cpe20g00243 1108 MobiDBLite consensus disorder prediction 407 500 - -
Cpe20g00243 1108 Coils Coil 150 170 - -
Cpe20g00243 1108 MobiDBLite consensus disorder prediction 477 500 - -
Cpe20g00243 1108 PANTHER ALDOLASE-RELATED 1 73 - -
Cpe20g00243 1108 PANTHER ALDOLASE-RELATED 100 1107 - -
Cpe20g00243 1108 MobiDBLite consensus disorder prediction 782 805 - -
Cpe20g00243 1108 MobiDBLite consensus disorder prediction 680 708 - -
Cpe20g00243 1108 MobiDBLite consensus disorder prediction 407 429 - -
Cpe20g00243 1108 SUPERFAMILY Tudor/PWWP/MBT 169 276 - -
Cpe20g00243 1108 SMART PWWP_4 172 231 IPR000313 -
Cpe20g00243 1108 MobiDBLite consensus disorder prediction 752 769 - -
Cpe20g00243 1108 Gene3D - 160 265 - -
Cpe20g00243 1108 MobiDBLite consensus disorder prediction 441 460 - -
Cpe20g00243 1108 Coils Coil 58 78 - -
Cpe20g00243 1108 MobiDBLite consensus disorder prediction 854 927 - -
Cpe20g00243 1108 MobiDBLite consensus disorder prediction 726 769 - -
Cpe20g00243 1108 Pfam PWWP domain 175 256 IPR000313 -
Cpe20g00243 1108 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 1 73 - -
Cpe20g00243 1108 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 100 1107 - -
Cpe20g00243 1108 MobiDBLite consensus disorder prediction 89 115 - -
Cpe20g00243 1108 MobiDBLite consensus disorder prediction 786 805 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00243 - - - mcha:111008692 1589.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01026 Cpe20g00243 CCT
Cpe09g01026 Cpe20g00243 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00909 Cpe-Chr11:7445428 Cpe20g00243 Cpe-Chr20:1372941 2.94E-20 dispersed
Cpe20g00243 Cpe-Chr20:1372941 Cpe09g01026 Cpe-Chr9:9036480 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g756 Blo04g00735 . Bda06g00598 . . Bpe13g00240 Bma06g00220 Bma12g01038 Cmo13g00917 . . . . . . Cpe20g00243 . . . . . . . . . . . . . . . . . . . . Csa01g00850 . Cme12g01695 . . Bda11g01653 . Bpe07g00839 Bpe15g00637 Bma03g00782 . . . . Cma13g00888 Cma18g00169 Car13g00728 Car18g00160 Cpe09g01026 . Bhi08g01607 Tan05g2010 . Lac10g0448 . . . Cla01g01299 Cam01g1430 Cec01g1465 . Clacu01g1365 Cmu01g1271 Cre01g1265 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004937 3 2 2 3 3 1 2 0 1 0 1 1 2 1 1 1 2 0 2 1 1 1 1 1 1 0 2 2 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00243 Cpe_Chr20 FPKM 23.965168 28.24972 37.656937 38.271351 12.26916 11.287669 11.769092 80.754402 76.64695 78.834526