Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00249 ATGGATTCGAAGTCACAGATTCAATCCAATTTCTTCAACATTACTCTTCTGAAAAAAGTAGCCCTAATCATCCCCTTAAACCCGAGCGCAATCTCTACACCATCTCAAGCAAAGTATCAATTTCCCCAAACCAAATCCCTCCTCCGTCAAGCTCAATTCTCACTCACTCCTCCTTCGTCTCCCTCAACCATGTCCACAACCACTCTCCTCTTCTTCTCTCTCATCCTCTCATCTCTTCCACTATTCAGTTCCACAGCCAACATCCACTCCAACGCCTGCCGGTCCTTCTGCGGCAACATCACCGTCGACTATCCTTTCTCCCTCCAGAACGGCTGCGGCCATCCTGGCTACCGCGACCTTCTGTACTGCATGAACGATGTTCTAATGTTCCACATCCGATCCGGATCCTACAGAGTCTTGGACATCGATTACGCTTACGAATCCCTAACTCTCCACGACCCTCACATGTCGACCTGCGACACAATCGTCCTCGGCGGTCGAGGCAACGGCTTCGACGTCGAAGAGTGGCGGTCGCCATACCTAAACCCGACGTCCGATAACGCCTTTCTCCTCATCGGTTGCTCCGCCCAATCGCCGCTCTTCCAAGGATTCCCAAACAAGCATCTCGTCTGTAGAAACATTTCCGGTATGAGCTGCGAGGAGTATTACGACTGTCCGGCGTGGGATTTACTGGGCCATCGGCGACCGGATCGGGTTTACGGGTCCGGCCCACCAGAGTGCTGTGCGATTCCTTTTGGGTCCATTAAGGCCATAAATCTCACGAAGCTCCAGTGTGAAGGCTATAGTAGTGCTTATAGTTTGGCCCCGTTGAGGATTAATGGGCCTGATGAGTGGGCCTACGGGATCCGTGTGAAATATTCCGTCCAAGCAAATGAAGACTTTTGCCGAGCGTGCCAAGCCACTGGCGGCACGTGCGGCTATGGCACTGATGGTGATAGACAGTTGTGCATGTGTGGGACCACCAATTCTACCTCTACATGTGATTTCCAAAATCGTCGTCACGTCGTATTCGGGGCTGAAGCCTGGTTTCGACATCCGTTACCAATGGCGTTTTCCTCGATTCTATCTCCGGTTTCGTGGCATTCTTCTTTCACTTGCAATTCTGAAGCGGCCTCTCTGTGTTTTGCTACCTTCGATTGTCCAAGTCCTCAGCGAAGGCGAAGCTTTAGCAAGTTCAGGGGTCTGAATTTCCACCTTCCGCCCTTGATTTCGGCTTCAAGAACGGTGGCCACCGCTGCTGTGTCACCGGCAGCAGTTGCAAATTCGGCCGCGCCAGTTACTTCATTCACTAATTTGATTGAATCTCTGATTAATCGCGTGGATTTGTCGGAGGATGAAGCGGAGGCGTCTCTTCAATATCTTCTCAACGATGCCAGCGAAGCATCAATTAGTGCTTTCCTCGTGTTACTCAGAGCCAAAGGAGAGACTTATGAAGAAATTGTGGGACTTGCGAGGGCGATGATCAAGCGTAGTGTGAAAGTGGATGGCTTATTTGATGCCGTTGACATTGTTGGAACAGGTGGAGATGGAGCAAACACAGTAAACATCTCAACTGGTGCTTCAATCCTTGCTGCAGCATGCGGCACAAAGGTTGCAAAGCAAGGAAACCGTTCGAGTTCTTCAGCATGTGGAAGTGCTGATGTCTTAGAGGCACTGGGGGTAGTTATTGATTTGGGACCTGAGGGAGTTGCCAAGTGTGTTGATGAAGCTGGAATGGGCTTCATGATGTCTCCCAAATACCATCCTGCAATGAAGATTGTCGGTCCTGTCAGGAAGAAGCTAAAAGTAAAAACTGCATTTAACATACTGGGCCCTATGCTCAATCCGGCTAGAGTTCCTTTCGCTGTTGTTGGTGTATATTCTGAGAACTTGGTCCCCAAAATGGCTAAAGCACTGCAACTATTTGGCATGAAAAGAGCATTAGTAGTTCACTCGGAGGGCTTAGATGAGATGAGTCCCCTTGGACCAGGACTTATTCTTGATGTAACACCTGAAAAGATTGATAAGTTTGCCTTTGATCCATTGGATTTTGGCATCCCTCGTTGCACTATAGATGACCTTCGAGGTGGAGACCCCGATTATAATGCAGAGGTCTTGAAGCGCATTTTATCCGGGGAAGAGGGGCATATTGCAAATGCACTTATCCTTAATGCTGCTGCCGCCCTTCTGGTTAGCAGCAAAGTGACCACCTTGGCCGAGGGAGTTAAGTTGGCTCGTGAAACTCAACGGTCTGGAAAAGCCATGAAGACTCTTAATTTGTTGATTGAACTCTCCAATAATCTAAGAGAAGCATAG 2316 49.22 MDSKSQIQSNFFNITLLKKVALIIPLNPSAISTPSQAKYQFPQTKSLLRQAQFSLTPPSSPSTMSTTTLLFFSLILSSLPLFSSTANIHSNACRSFCGNITVDYPFSLQNGCGHPGYRDLLYCMNDVLMFHIRSGSYRVLDIDYAYESLTLHDPHMSTCDTIVLGGRGNGFDVEEWRSPYLNPTSDNAFLLIGCSAQSPLFQGFPNKHLVCRNISGMSCEEYYDCPAWDLLGHRRPDRVYGSGPPECCAIPFGSIKAINLTKLQCEGYSSAYSLAPLRINGPDEWAYGIRVKYSVQANEDFCRACQATGGTCGYGTDGDRQLCMCGTTNSTSTCDFQNRRHVVFGAEAWFRHPLPMAFSSILSPVSWHSSFTCNSEAASLCFATFDCPSPQRRRSFSKFRGLNFHLPPLISASRTVATAAVSPAAVANSAAPVTSFTNLIESLINRVDLSEDEAEASLQYLLNDASEASISAFLVLLRAKGETYEEIVGLARAMIKRSVKVDGLFDAVDIVGTGGDGANTVNISTGASILAAACGTKVAKQGNRSSSSACGSADVLEALGVVIDLGPEGVAKCVDEAGMGFMMSPKYHPAMKIVGPVRKKLKVKTAFNILGPMLNPARVPFAVVGVYSENLVPKMAKALQLFGMKRALVVHSEGLDEMSPLGPGLILDVTPEKIDKFAFDPLDFGIPRCTIDDLRGGDPDYNAEVLKRILSGEEGHIANALILNAAAALLVSSKVTTLAEGVKLARETQRSGKAMKTLNLLIELSNNLREA 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1408479 1417432 + Cp4.1LG20g02490.1 Cpe20g00249 486878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00249 771 Pfam Glycosyl transferase family, helical bundle domain 439 497 IPR017459 -
Cpe20g00249 771 Gene3D Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 504 771 IPR035902 -
Cpe20g00249 771 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE 408 769 IPR005940 GO:0000162|GO:0004048
Cpe20g00249 771 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 506 763 IPR035902 -
Cpe20g00249 771 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 435 501 IPR036320 -
Cpe20g00249 771 Pfam Wall-associated receptor kinase galacturonan-binding 93 153 IPR025287 GO:0030247
Cpe20g00249 771 Pfam Glycosyl transferase family, a/b domain 506 754 IPR000312 GO:0016757
Cpe20g00249 771 TIGRFAM trpD: anthranilate phosphoribosyltransferase 440 762 IPR005940 GO:0000162|GO:0004048
Cpe20g00249 771 Hamap Anthranilate phosphoribosyltransferase [trpD]. 438 764 IPR005940 GO:0000162|GO:0004048
Cpe20g00249 771 Gene3D Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 438 501 - -
Cpe20g00249 771 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE, CHLOROPLASTIC-LIKE ISOFORM X1 408 769 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00249 K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] - cpep:111782839 654.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00761 Cpe-Chr11:6097431 Cpe20g00249 Cpe-Chr20:1408479 6.07E-20 dispersed
Cpe19g00950 Cpe-Chr19:6769135 Cpe20g00249 Cpe-Chr20:1408479 1.30E-16 dispersed
Cpe20g00249 Cpe-Chr20:1408479 Cpe20g00348 Cpe-Chr20:1967796 4.03E-24 dispersed
Cpe03g01310 Cpe-Chr3:10609571 Cpe20g00249 Cpe-Chr20:1408479 3.94E-37 transposed
Cpe20g00249 Cpe-Chr20:1408479 Cpe09g01019 Cpe-Chr9:8995832 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g770 . . . . . . . . . . . . . . . Cpe20g00249 . . . . . . . . . . . . . . . Cone2ag0915 Cone16ag0093 . . Lsi02g00381 Csa01g00861 Chy12g01260 Cme12g01685 . . . . . . . . Sed08g2521 . . . . Car13g00720 . . . Bhi08g01624 Tan05g1995 Cmetu12g2030 Lac10g0459 Hepe07g2218 . . Cla01g01308 Cam01g1422 Cec01g1456 Cco01g1468 Clacu01g1373 Cmu01g1281 Cre01g1258 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009653 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00249 Cpe_Chr20 FPKM 38.462872 40.970669 24.246756 22.501511 19.136225 22.387112 18.973377 32.842445 31.390831 31.65999