Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00253 ATGTCATCAACGATGAGGGAAACGTCGAGATTAGCCGAGGCTTCGATCAACGGCATCGTTCGACGAATGGTTAATCTTCCCAGAAGTATATTAGGAGGATTTTCAAGAGTTATGGGTGGAGGTAGAAGAAGCCAGACACTGCCATCCAGTTATCAATATCAGATTCTAGAGCAGGACATACAAAACGTCCCGGAAGAATGGTCTTTCCTGACCAGTTTCGAGTATCAGTATGGCTCGATGCATCCTTTCTTTTACGCTTGTCGATTTGCAGAAGCCATGAAGATAGCAGAAGATGATCATAAGTTCTTGTTCTTGTATTTACATTCACCAGATCACCCATTTACTCCCTCTTTCTGTGAGGAGACACTGCGTTCAGAGCTAGTAGTGCAGTTTCTTGATGCTAACTTCACCTCTTGGGGAGCACTTGCCTACAGAGGAGATGGCCTACAAATGGCTACAACATTGGGAGCTACCAACTTCCCTTTCTGTGCTGTAATTGCTCCAACTCGAGGCGAAAGCATAACAGTCCTGCAACAGCTTGAAGGGCCAGTTTCTCCAGCTGAACTGGTGGAGATTCTACAGAGGACAATGGAGGAGCAGGGATCAGCTTTTGGTTGCTCCAAACTAAAGCGAGACGAAAAGATAAGAGCCGACCGCAGGCTTCGAGAAGAACAAGACAGAGCATATCATGCAGCTCTTCAAGAAGACAAGGAGAGGGAAAGACTTAAAAATCGATCTCGGGCGATACCGAAGAAAGCACACGACGAGAGGCTCAAGCAGAATTCTCCAAACAAGGATCCTGCAAGTAAAGCAAAGGATTCTCAGCCTAGCTCCCAGATACTAATAAGGTTTCCAAACGGTGAAAGGAGGGAGAAAAGCTTTTCAAGCATGGACAAGGTGAAGTCGATTTACAGCTATATCGACTCGCTCGGCCTGCCAGGTACTGAAAACTACAGATTGATAGCAAGCTTCCCAAGAAGAGTATACGGTATGGATGAGATGAATATGACTCTGAAAGATGCTAGCCTCCACCCAAGAGCAAGCCTGTTCCTCGAGCGAATGATTCCATGGTCTAAGTTTAAAACGGAGAAAAGTGAGGTGATTGATAATCATAGCTTCGTGACTGTCAATAGAGGCCCAAATGATGCTGTTGACTGGTTGCTCCGAATGAACTCCAGATGCCAATTTGGGAACGAGAAGAGGACGCAGAGCGAGCGACCGAGTCGAATGGAGAATCCGAAATTATCAATCTTTCTTGTCAACCTCTTCTGTATTCTCAGTCTTTGCATCGCCATCGAATCACCTCAATACGATGTTGTTCATACAGAATCAGACTTCGAAATCAGATTTTACAGAAAGTCCACTTGGATGTCCGCTCCCGTCCAAGACCTATCCTTCGAGAAAGCTACTAAATATGGTTTCCACAGACTGTTCCAGTACATACAAGGTGCCAATCTGAATTGGTCAAGGATTGCCATGACTGCTCCTGTCTTGACAAGCATTGTCCCAGGAACTGGCCCTCTTCACTCGTCCTCTTATCTTGTCCAACTCTATCTGCCGGTTAAGTTTCAAGCCTCACCACCTCTTCCCCTTCCTGAACTGAAACTGAAGCCCTGTGGTTGGGAAGCTCATTGCGTTGCAGTTCGAAAGTTCTCTGGATTTGCAAGGGATGAGAAGGTCATAAAGGAGGCAGAGCAACTCGCCACCAGCTTGAGTAGGTTCCCTTTGGTGAATGCCACCTCTGAAAGGGGTTATGCATATGCCATTGCCCAATACGACTCGCCCTTCCGGTTGATTGGACGAGTCAATGAAGTCTGGGTCGATGTCGATGCAGCCGATTTGGATGGATGTACATCCAGTGCCATTGCTGCATTCTAA 1878 46.54 MSSTMRETSRLAEASINGIVRRMVNLPRSILGGFSRVMGGGRRSQTLPSSYQYQILEQDIQNVPEEWSFLTSFEYQYGSMHPFFYACRFAEAMKIAEDDHKFLFLYLHSPDHPFTPSFCEETLRSELVVQFLDANFTSWGALAYRGDGLQMATTLGATNFPFCAVIAPTRGESITVLQQLEGPVSPAELVEILQRTMEEQGSAFGCSKLKRDEKIRADRRLREEQDRAYHAALQEDKERERLKNRSRAIPKKAHDERLKQNSPNKDPASKAKDSQPSSQILIRFPNGERREKSFSSMDKVKSIYSYIDSLGLPGTENYRLIASFPRRVYGMDEMNMTLKDASLHPRASLFLERMIPWSKFKTEKSEVIDNHSFVTVNRGPNDAVDWLLRMNSRCQFGNEKRTQSERPSRMENPKLSIFLVNLFCILSLCIAIESPQYDVVHTESDFEIRFYRKSTWMSAPVQDLSFEKATKYGFHRLFQYIQGANLNWSRIAMTAPVLTSIVPGTGPLHSSSYLVQLYLPVKFQASPPLPLPELKLKPCGWEAHCVAVRKFSGFARDEKVIKEAEQLATSLSRFPLVNATSERGYAYAIAQYDSPFRLIGRVNEVWVDVDAADLDGCTSSAIAAF 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1429622 1434257 - Cp4.1LG20g02620.1 Cpe20g00253 486882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00253 625 MobiDBLite consensus disorder prediction 231 263 - -
Cpe20g00253 625 SUPERFAMILY Ubiquitin-like 235 354 IPR029071 -
Cpe20g00253 625 MobiDBLite consensus disorder prediction 264 282 - -
Cpe20g00253 625 Pfam UBX domain 275 352 IPR001012 GO:0005515
Cpe20g00253 625 Gene3D Regulatory factor, effector binding domain 431 615 IPR011256 -
Cpe20g00253 625 CDD UAS 89 199 - -
Cpe20g00253 625 CDD UBX 280 352 - -
Cpe20g00253 625 Gene3D - 276 356 - -
Cpe20g00253 625 SUPERFAMILY Thioredoxin-like 62 201 IPR036249 -
Cpe20g00253 625 SMART 45neu3 68 194 IPR006577 -
Cpe20g00253 625 ProSiteProfiles UBX domain profile. 273 351 IPR001012 GO:0005515
Cpe20g00253 625 PANTHER FAS-ASSOCIATED PROTEIN 6 352 - -
Cpe20g00253 625 SMART ubx_3 269 353 IPR001012 GO:0005515
Cpe20g00253 625 Pfam SOUL heme-binding protein 432 607 IPR006917 -
Cpe20g00253 625 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 6 352 - -
Cpe20g00253 625 MobiDBLite consensus disorder prediction 231 293 - -
Cpe20g00253 625 Gene3D Glutaredoxin 57 203 - -
Cpe20g00253 625 SUPERFAMILY Probable bacterial effector-binding domain 422 609 IPR011256 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00253 K18726 FAF2, UBXD8; FAS-associated factor 2 - csv:101205471 606.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01667 Cpe-Chr1:10371412 Cpe20g00253 Cpe-Chr20:1429622 4.03E-07 dispersed
Cpe01g02443 Cpe-Chr1:20269068 Cpe20g00253 Cpe-Chr20:1429622 8.98E-31 dispersed
Cpe05g00779 Cpe-Chr5:4827239 Cpe20g00253 Cpe-Chr20:1429622 4.55E-71 dispersed
Cpe08g00807 Cpe-Chr8:6430393 Cpe20g00253 Cpe-Chr20:1429622 1.47E-10 dispersed
Cpe09g00518 Cpe-Chr9:3460440 Cpe20g00253 Cpe-Chr20:1429622 1.88E-48 dispersed
Cpe20g00253 Cpe-Chr20:1429622 Cpe08g01013 Cpe-Chr8:7806223 2.46E-06 dispersed
Cpe20g00253 Cpe-Chr20:1429622 Cpe14g00824 Cpe-Chr14:6672474 6.26E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g788 Blo04g00728 . . . . . . . Cmo13g00906 . . . . . . Cpe20g00253 . . . . . . . . . . . . . . . Cone2ag0920 Cone16ag0087 . . Lsi02g00391 Csa01g00869 Chy12g01253 Cme12g01677 . . . . . Bpe15g00644 . . Sed02g1604 . . Cma13g00873 . Car13g00715 . . . Bhi08g01641 Tan05g1988 Cmetu09g0491 Lac10g0471 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013011 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00253 Cpe_Chr20 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0