Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00259 ATGGGATCATTAGCAACAGGAACAAACAATTACTACAGCCCTTGTGCAGCCTGCAAATTCCTAAGAAGAAAATGCATAGCAGGATGCATATTTGCACCCTATTTCCCACCAGAGGAGCCCCAAAAATTCGCCAATGTCCACAAGGTGTTCGGAGCCAGTAACGTGGCGAAGCTCCTCAATGAAGTTCTTCCTCATCAACGACAAGACGCCGTCGTGTCCCTCGCCTACCAAGCAGAGGCCAGAATCAGAGACCCTGTTTATGGCTGTGTTGCCGCCATTTCCTTCCTTCAAAAACAGGTCCAAAGGCTCCAAAATGAACTCGATGCAGCTAAAGCTCGCCTTTTGCTATACTCTTGCACTGATTTCTCAACACCCTTTTCGCCTCAGCCTCAGATTATTAGCCCTCCACTGCTTTGGAATCATAATGATATTGTTTCTGCTAATTCTTCTGTGTATTTTAATGGAGGAATTTAA 474 45.57 MGSLATGTNNYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFSTPFSPQPQIISPPLLWNHNDIVSANSSVYFNGGI 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1458285 1458758 - Cp4.1LG20g02580.1 Cpe20g00259 486888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00259 157 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Cpe20g00259 157 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 8 133 - -
Cpe20g00259 157 Coils Coil 93 120 - -
Cpe20g00259 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 133 - -
Cpe20g00259 157 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe18g00859 Cpe20g00259 CCT
Cpe09g01010 Cpe20g00259 CCT
Cpe18g00859 Cpe20g00259 ECH
Cpe09g01010 Cpe20g00259 ECH
Cpe04g01574 Cpe20g00259 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00259 Cpe-Chr20:1458285 Cpe05g01559 Cpe-Chr5:10711597 1.68E-46 dispersed
Cpe01g02332 Cpe-Chr1:19603996 Cpe20g00259 Cpe-Chr20:1458285 7.90E-59 wgd
Cpe18g00859 Cpe-Chr18:7908787 Cpe20g00259 Cpe-Chr20:1458285 8.00E-67 wgd
Cpe20g00259 Cpe-Chr20:1458285 Cpe04g01574 Cpe-Chr4:12321467 2.25E-63 wgd
Cpe20g00259 Cpe-Chr20:1458285 Cpe09g01010 Cpe-Chr9:8933543 1.54E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51109 PF03195 LOB 8.10E-41 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00259 - - ahf:112722314 201.445