Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00262 TTTCGGGAACAGAGCTTTGAGCGCGATGATACCGGCTTACGGATAGGATTCTTCGAGTTATTTTGCTTCGATTTTCTAGAAAAGATCCAATTGCCTTTAGTTAAGTATGGAGAAATGCTAAGGCGCTTCAGTGTTAGAGCCCATGGAAACAATAAATTGGATCTTGACATCAATGGCTTGAGAGCAAAGATACTTAATCTCTTCAACTTCTCTTCTGATACTGATTTTACATTGACTTATATTGATGAAGATGGTGATGTGGTGACCTTGGTCAATGATGATGATCTGCATGAATTGATGAGGCAACAGTTGAAGTTCTGGAAAATTGATGTGCATCTGAGAAATAAGGAAAATGACCAATCCCATAACAGATCAGATGGAAGTTCTACCCCTATGATGTCAGCAAGTGGCCAACGTTCGTTTCAAAATGTTCCTCCTGGTATCTCTGAGGTTTTGAAATCTCTGCCAGAGCCCTTACCTGAATTTTGTTCAAAGGTCTTCCTTGACATCGCTTCAAAAGCCGCAGTTGCTAGCCCTGTGTTTTCTGAGCTTGCTCAGAGCTTTATTCGGTTGGGAAGCACACACCCGAACACTGGTTCCCGGGCCTCATCTGTTCCAGAGACGTGCACACAGAATGTGGCCACTGAGGGTTCTACGGGTTCTCTAGGTGCAGATTCAAAAGCTTCAAAGAACGATGACGTTCTATGCACTGGTTTAGCTTATAAAGATAGAAAGATAATTAACAGTGAGAGCATGACAAAGAACATTGGTATAGCTGGACCTGCTGTTGATCTTAATGCCCTTCCTTGTGATTCTATTGCTTCTGGATTTGCTATTGGGAAATCAGCTACTGCTGCCCCTTCCAGCAGCCCTTTTGATGGAAAGGAGGAAGAAAAACGCAATGAAATGTATGTGCGCGGTCTTCCTGCATCAGTGCACACTAAACCACATAATTCACCGTCCACTGATAGGGATGGTGGGTTCGTGAACGAGTGCCCTTTTAGTGGATTACCTGTGGCTACCGAACCATCTATGCTTGGAACTGCAGGTATAGATCCAGTGAACAGTGGTTACATTGAATCTGCAGGAAGTAAGTTCCATAAAGGTCCAAATGTCAGCAGCAGTGGCTACATTGAACCACTCCATGAAGATCCAATAATTAGCAGCCGAGGTTACGTTGAACCTGTGAGAAGTATATTCCACAGAGGTGTTATTTGTGATGGCTGTGGAGCCCATCCGATTACTGGTCCACGGTTCAAGTCCCAAGTGAAAGATAATTATGACCTCTGTATGGTCTGCTTTGCTGAAATGGGCAATGAGGCTGACTACATTAGGATCGACCGTCCTGTCTCTTACCGGCGTCCAAGAATGAAATCCTGCTTTCGTAGACCTCCATTTCCTGGCCCCCAAATAATCGATGCTTTGATAAGTTCTGGAAAGCAGACCAAACTTGATAGTCGCTTTGTAGACGACATTAATGTCTTGGATGGCACTGTGATGCCTCCTTGTACCCCATTTACCAAGATATGGAGGTTGCATAATAGCGGGAGTGTGAACTGGCCTCGTGGTACACAGCTAGTATGGACAGGAGGAGATAAGTTCAGTCGTTCAGAATCGGTCGAATTAGAGGTTCCCGCTGATGGACTTCCTCCGGGTCGGGAAATTGACATTGCAGTTGACTTTATAGCCCCTCCATTTTCTGGTCAATACACCTCATACTGGATTATGGCATCTCCATCTGGCCAGAAGTTTGGACAACGTGTTTGGGTTCTTATTCAGGTTGATGCAGCACTTGGGATGCCAGATTCCGAGCATTCGCGAGCTGTGGACTCAAATTTATCCTCACCCATAGTCATAGGTAGTGCTGGTTCAAACAGCCATGAAGGTGTAGAAAAGAATGCAACTCCTGCAATTTCTGACGGTGTCCTTCTCCCTCCTCGTAATTCCGTTCCTATAATCGAACTAGTAAAACCTGATCTTAATGTGCCTATAAGTGAAACAGAGATACAGTTCCTAGTAAATGAGGATATGCTAGTTGGGAAGAGTCCTGCTACTTCTGCTACTGAGGATAACTTAGTCTCATCTCGCCCTGCTGTCGATGGCCATGGAGTTCTACCTCGTTCAACCGAGGTTCCCTCTGTGCCATACCCTCTTATTGATCTTTCTGTACCAACTCCAGCTGCAAACTCATCTCCTCCAATACCATCCCCCAAGGTTTCTCCAGCATCATCTGAAAAAGTCACTACTAACAACGTTGTTGAAGAAACTCTTCTTAAAACACTACAGGATATGGGATTCAAACAGGTTGATCTGAACAAGGAAGTACTGAAGAGGAACGAGTACAATCTAGAGCACTCGGTGGACGAACTCTGTGGAGTTTCCGAATGGGATCCGATGCTTGATGAGTTGGAGGAAATGGGATTCATCGACAAGGAAACGAACAAAAGACTTCTGATGAAGAACAATGGCAGCATGAAGCGAGTAGTGATGGAACTTCTATATGGGGAGAAGGCTTAG 2517 44.74 FREQSFERDDTGLRIGFFELFCFDFLEKIQLPLVKYGEMLRRFSVRAHGNNKLDLDINGLRAKILNLFNFSSDTDFTLTYIDEDGDVVTLVNDDDLHELMRQQLKFWKIDVHLRNKENDQSHNRSDGSSTPMMSASGQRSFQNVPPGISEVLKSLPEPLPEFCSKVFLDIASKAAVASPVFSELAQSFIRLGSTHPNTGSRASSVPETCTQNVATEGSTGSLGADSKASKNDDVLCTGLAYKDRKIINSESMTKNIGIAGPAVDLNALPCDSIASGFAIGKSATAAPSSSPFDGKEEEKRNEMYVRGLPASVHTKPHNSPSTDRDGGFVNECPFSGLPVATEPSMLGTAGIDPVNSGYIESAGSKFHKGPNVSSSGYIEPLHEDPIISSRGYVEPVRSIFHRGVICDGCGAHPITGPRFKSQVKDNYDLCMVCFAEMGNEADYIRIDRPVSYRRPRMKSCFRRPPFPGPQIIDALISSGKQTKLDSRFVDDINVLDGTVMPPCTPFTKIWRLHNSGSVNWPRGTQLVWTGGDKFSRSESVELEVPADGLPPGREIDIAVDFIAPPFSGQYTSYWIMASPSGQKFGQRVWVLIQVDAALGMPDSEHSRAVDSNLSSPIVIGSAGSNSHEGVEKNATPAISDGVLLPPRNSVPIIELVKPDLNVPISETEIQFLVNEDMLVGKSPATSATEDNLVSSRPAVDGHGVLPRSTEVPSVPYPLIDLSVPTPAANSSPPIPSPKVSPASSEKVTTNNVVEETLLKTLQDMGFKQVDLNKEVLKRNEYNLEHSVDELCGVSEWDPMLDELEEMGFIDKETNKRLLMKNNGSMKRVVMELLYGEKA 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1473569 1479869 + Cp4.1LG20g02680.1 Cpe20g00262 486891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00262 838 MobiDBLite consensus disorder prediction 686 706 - -
Cpe20g00262 838 CDD UBA_NBR1 753 791 - -
Cpe20g00262 838 SMART PB1_new 34 114 IPR000270 GO:0005515
Cpe20g00262 838 MobiDBLite consensus disorder prediction 117 141 - -
Cpe20g00262 838 Pfam Zinc finger, ZZ type 401 436 IPR000433 GO:0008270
Cpe20g00262 838 CDD UBA_NBR1 795 833 - -
Cpe20g00262 838 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 34 222 - -
Cpe20g00262 838 ProSiteProfiles PB1 domain profile. 28 111 IPR000270 GO:0005515
Cpe20g00262 838 Gene3D - 748 794 - -
Cpe20g00262 838 ProSiteProfiles Zinc finger ZZ-type profile. 401 451 IPR000433 GO:0008270
Cpe20g00262 838 Pfam Ig-like domain from next to BRCA1 gene 493 594 IPR032350 -
Cpe20g00262 838 Gene3D Immunoglobulins 478 597 IPR013783 -
Cpe20g00262 838 SUPERFAMILY UBA-like 796 833 IPR009060 GO:0005515
Cpe20g00262 838 Gene3D - 795 835 - -
Cpe20g00262 838 PANTHER PROTEIN JOKA2 34 222 - -
Cpe20g00262 838 SUPERFAMILY UBA-like 755 791 IPR009060 GO:0005515
Cpe20g00262 838 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 786 835 IPR015940 -
Cpe20g00262 838 Gene3D - 32 114 - -
Cpe20g00262 838 PANTHER PROTEIN JOKA2 396 836 - -
Cpe20g00262 838 Gene3D - 396 447 IPR043145 -
Cpe20g00262 838 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 396 836 - -
Cpe20g00262 838 SUPERFAMILY CAD & PB1 domains 34 106 - -
Cpe20g00262 838 SUPERFAMILY RING/U-box 398 452 - -
Cpe20g00262 838 Pfam PB1 domain 54 102 IPR000270 GO:0005515
Cpe20g00262 838 MobiDBLite consensus disorder prediction 124 141 - -
Cpe20g00262 838 CDD NBR1_like 482 595 IPR032350 -
Cpe20g00262 838 MobiDBLite consensus disorder prediction 726 747 - -
Cpe20g00262 838 SMART zz_5 400 445 IPR000433 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00262 K17987 NBR1; next to BRCA1 gene 1 protein - csv:101205935 969.533
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01004 Cpe20g00262 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00262 Cpe-Chr20:1473569 Cpe09g01004 Cpe-Chr9:8892408 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g826 Blo04g00719 . . . . . . . Cmo13g00893 Cmo18g00152 . . . . . Cpe20g00262 . . . . . . . . . . . . . . . . . Cone13ag0168 Cone19ag0165 . Csa01g00883 Chy12g01240 Cme12g01663 . . . Bda14g00797 . Bpe15g00653 Bma03g00769 . Sed01g1623 . . Cma13g00862 Cma18g00191 Car13g00705 Car18g00183 Cpe09g01004 . Bhi08g01660 Tan05g1970 Cmetu12g0808 . . . . Cla03g00287 Cam03g0304 Cec03g0298 Cco03g0313 Clacu03g0305 Cmu03g0915 Cre03g0607 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004955 1 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 0 1 1 0 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00262 Cpe_Chr20 FPKM 0.479233 0.0 0.0 0.0 0.0 0.61989 0.0 0.0 0.0 0.0