Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00266 ATGTCTCAGGATTTGTCATTGGATCAAGACCTGGATGAATCTGATCCCGAGTTCGTGGAGATTGATCCTACCGGTAGATATGGACGGTATAAGGAAGTTTTAGGAAAAGGGGCATTCAAAAGGGTATATCGGGCTTTTGATGAGTTGGAAGGAATTGAAGTAGCTTGGAATCAGATTAAGGTAACAGATTTATTGAGGAACTCTGATGATTTGGAGCGACTATATTCAGAAGTTCATTTGCTTAAGACATTGAAGCACAAGAACATAATCAAATTTTACAGTTCATGGGTTGATACGAAGAATGAAAACATCAACTTCATTACAGAGATATTCACTTCAGGGACACTGCGACAATATAGAAAGAAGCACAAGCATGTTGATTTGAGAGCACTGAAAAAATGGTCGAGGCAGATATTAGAGGGCCTTCTGTATCTTCATAGTCATGACCCTCCAGTTATACATAGAGATTTAAAATGTGACAATATCTTTGTCAATGGCAACCAAGGTGAGGTGAAAATCGGTGACTTAGGACTTGCAGCCATTCTTCAGCAAGCTCGTTCAGCTCACAGTGTCATTGATTTGGATCAGTTGGGGATTAAACCAGCTTCACTGGCAAAAGTCACCAATTTAGGAGTTAAAGCATTTATAGAAAAATGTATTGCAAATGTCTCTACTCGCTTGCCTGCAAAAGATCTTTTAATGGATCCATTTCTCCAAGCAGATGATGATCATGAAAGTATACCTCGTAATCTACAATCAAAGATACTTCATACAGGAAGAAAAGAGCAGATTGATTTTGTCGATGATACTTCTGCTGAGACTTGTAGAGATTTTAGTATGCATGGTCAAAGAAAAGATGTTAACAAGATATTTCTCAAACTACGAATTGCAGATTCCATGGGTCGCAAGTATTGGTCGGACTCTCCAAAAGGTATTGGTGGGTGCTCTCCTATTAAGCCAGGTCCTTCATACTTGTCTCTTACCTCAGATCAGAATGTTGAATCCTCTAGCAGCCACATACTTGGGAATAATCTTGATCATTCTGCAATAATTAAGGGACTGGAAAGTGAACTTTTGTCAGATGGTGATATTCATGATAGCTCTGAGGCACATCTTTTAGAAGAGAACTGTTCTGATGAATCAGTTGACCTCAAAATAATGGCTGAGAAACTTAAAAATCTGTTGACACAACAACAAAAGGAATTAGATGAACTAAAGAGAGAGCATAAATTAGTTGTTTCAGAACTTCTCACTGAACTAACACCTGAATCTTGTCAGAAGGTTTTAGGGATGTGTAAGCTAAAGCGTTCTGATTTTGCGTTTGATCTCTGA 1332 38.36 MSQDLSLDQDLDESDPEFVEIDPTGRYGRYKEVLGKGAFKRVYRAFDELEGIEVAWNQIKVTDLLRNSDDLERLYSEVHLLKTLKHKNIIKFYSSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIDLDQLGIKPASLAKVTNLGVKAFIEKCIANVSTRLPAKDLLMDPFLQADDDHESIPRNLQSKILHTGRKEQIDFVDDTSAETCRDFSMHGQRKDVNKIFLKLRIADSMGRKYWSDSPKGIGGCSPIKPGPSYLSLTSDQNVESSSSHILGNNLDHSAIIKGLESELLSDGDIHDSSEAHLLEENCSDESVDLKIMAEKLKNLLTQQQKELDELKREHKLVVSELLTELTPESCQKVLGMCKLKRSDFAFDL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1491133 1494741 - Cp4.1LG20g02810.1 Cpe20g00266 486895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00266 443 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Cpe20g00266 443 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 198 301 - -
Cpe20g00266 443 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 8 193 - -
Cpe20g00266 443 Pfam Protein kinase domain 31 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00266 443 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 198 301 - -
Cpe20g00266 443 Coils Coil 388 415 - -
Cpe20g00266 443 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 300 437 - -
Cpe20g00266 443 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 193 - -
Cpe20g00266 443 SMART serkin_6 28 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00266 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Cpe20g00266 443 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 300 437 - -
Cpe20g00266 443 ProSiteProfiles Protein kinase domain profile. 28 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00266 443 SUPERFAMILY Protein kinase-like (PK-like) 21 238 IPR011009 -
Cpe20g00266 443 Gene3D Transferase(Phosphotransferase) domain 1 111 195 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g01001 Cpe20g00266 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01800 Cpe-Chr3:13510775 Cpe20g00266 Cpe-Chr20:1491133 3.79E-103 dispersed
Cpe04g00042 Cpe-Chr4:420447 Cpe20g00266 Cpe-Chr20:1491133 2.43E-99 dispersed
Cpe05g01401 Cpe-Chr5:9854058 Cpe20g00266 Cpe-Chr20:1491133 1.05E-83 dispersed
Cpe10g00999 Cpe-Chr10:5691363 Cpe20g00266 Cpe-Chr20:1491133 1.34E-98 dispersed
Cpe11g00973 Cpe-Chr11:8243172 Cpe20g00266 Cpe-Chr20:1491133 1.02E-82 dispersed
Cpe12g00200 Cpe-Chr12:1274157 Cpe20g00266 Cpe-Chr20:1491133 9.98E-73 dispersed
Cpe17g00146 Cpe-Chr17:934227 Cpe20g00266 Cpe-Chr20:1491133 1.19E-72 dispersed
Cpe20g00266 Cpe-Chr20:1491133 Cpe09g01001 Cpe-Chr9:8877785 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63074 PF00069 Pkinase 7.10E-34 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00266 K08867 - csv:101206177 513.457