Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00278 ATGGCCACACCTCATCATCATCTAGTGTTCATCTGTAACCCCGCAATCGGAAATTTAGTTCCGGCAGTGGAATTCGCCGTCCGATTAGTCCATCACGACCCTCGTTTTTTGGCCACGTTCCTCGCCCTCGACATCCCTGGAAGACCCCTCGTCAATGCCTACACCCAATCACGTTTCTCTGCTTCCACTTCTCAAAACATCCAATTCATTGCTATCCCATCTGCCCAACCCCCATCTCCCGCTCTCTTCCATTCCCACATCGCCTATTTGTCATTGTATTTCGAGTCTTATAAGCCCCACGTCAAGCAAGCCATTATTGACCTCCACAATCCCCAAAATTCCGCCCGTGTCGTTGGGGTTTTTGTCGATATGTTCACGACGGCCTTCATCGATGTTGCTAATGACCTCCAAATTCCTAGCTACCTCTTCTTTGCGTCTCCGGCTACTTTTCTTAGCCTCATGGTTCAACTACCTAAGATGGATCGTGACCGAGTTGAATCCTTGATCCGTGACTCGGATGCTGAGTTTGTGTTGCCGAGCTTTGCTCACTCGCTGACTTCCAGTTTGTTGCCGTCCACTGTTTTGAAGACGCGGGATGGTCTTTTCTGGTACGCCCATCACGGGCGTAGGTATGGCGAGACGAATGGGGTTGTTATTAATTCGTTTACAGAGCTTGAGCCTCATGCGCTGAGCTCGTTGGGTGAGATTCCACCGGTTTATGCTGTTGGGCCTTTGCTTGATTTGGGCGGCCCAGCCCAGTGGCAGCCGTCTCGAGCCACCCACCAGAGCGTCCTGAAGTGGCTCGACGGTCAGCCTGAGCGGTCGGTTGTTCTGTTGAGCTTTGGGAGTATGGGAAGTCTTGATAAAGCTCAAATTCGAGAAATTGCCTTTGGGCTCCAACGGGCTGGGTTCCGCTTTGTGTGGGTCGTGCGTCAGCCGCCCAAGTCCCAGTTAGAGCACCCCGACGACTACTCCGATCTAGACGACGTGTTGCCGGATGGGTTCGTAACTCGCACCGCTGGCCTGGGATTGGTCTGTGGGTGGGTCCCGCAGGTGAGTATTTTGAGCCACGGTGCTATTGGAGGGTTCGTGTCGCATTGCGGGTGGAACTCGATTTTGGAGAGCTTATGGTTTGGTGTGCCAATAGCAACGTGGCCGGTGTATGCAGAGCAGCAAATGAACGCCTTTGAAATGGTGAAGGAATTGGAATTGGCGGTGGAGTTGCGGTTGGATTACAGGGAAGGAAGCAAGCTGGTGACGGCGGAGGAGCTAGAGACAGCGCTGAGGCGCTTAATGGACGGCGGCGATGAAGTCAGGGCGAGGGTGAAGCGGATGGGAGAGAAGTGCAGAACTGTCCTACTGGAAAATGGTTCATCGTATACGGCATTGAATTCTCTGATTGAGAAATTAACGGCTCAGATTTTGTAA 1428 52.59 MATPHHHLVFICNPAIGNLVPAVEFAVRLVHHDPRFLATFLALDIPGRPLVNAYTQSRFSASTSQNIQFIAIPSAQPPSPALFHSHIAYLSLYFESYKPHVKQAIIDLHNPQNSARVVGVFVDMFTTAFIDVANDLQIPSYLFFASPATFLSLMVQLPKMDRDRVESLIRDSDAEFVLPSFAHSLTSSLLPSTVLKTRDGLFWYAHHGRRYGETNGVVINSFTELEPHALSSLGEIPPVYAVGPLLDLGGPAQWQPSRATHQSVLKWLDGQPERSVVLLSFGSMGSLDKAQIREIAFGLQRAGFRFVWVVRQPPKSQLEHPDDYSDLDDVLPDGFVTRTAGLGLVCGWVPQVSILSHGAIGGFVSHCGWNSILESLWFGVPIATWPVYAEQQMNAFEMVKELELAVELRLDYREGSKLVTAEELETALRRLMDGGDEVRARVKRMGEKCRTVLLENGSSYTALNSLIEKLTAQIL 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1558254 1559889 - Cp4.1LG20g02770.1 Cpe20g00278 486907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00278 475 PANTHER GLYCOSYLTRANSFERASE 6 471 - -
Cpe20g00278 475 Gene3D Glycogen Phosphorylase B; 253 451 - -
Cpe20g00278 475 ProSitePatterns UDP-glycosyltransferases signature. 348 391 IPR035595 -
Cpe20g00278 475 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 469 - -
Cpe20g00278 475 CDD GT1_Gtf-like 7 470 IPR002213 GO:0008194
Cpe20g00278 475 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 264 434 IPR002213 GO:0008194
Cpe20g00278 475 Gene3D Glycogen Phosphorylase B; 9 463 - -
Cpe20g00278 475 PANTHER GLYCOSYLTRANSFERASE 6 471 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00278 - - - csv:101216616 711.835
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00547 Cpe-Chr6:3285630 Cpe20g00278 Cpe-Chr20:1558254 2.43E-06 dispersed
Cpe06g00549 Cpe-Chr6:3303850 Cpe20g00278 Cpe-Chr20:1558254 4.13E-59 dispersed
Cpe10g00590 Cpe-Chr10:3462622 Cpe20g00278 Cpe-Chr20:1558254 1.31E-56 dispersed
Cpe19g00794 Cpe-Chr19:6002027 Cpe20g00278 Cpe-Chr20:1558254 9.61E-28 dispersed
Cpe20g00278 Cpe-Chr20:1558254 Cpe08g00103 Cpe-Chr8:655968 6.39E-40 dispersed
Cpe20g00278 Cpe-Chr20:1558254 Cpe14g00568 Cpe-Chr14:3606104 1.79E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g414 . . . Bda15g00639 Bpe12g00509 . . . . . . . . . . Cpe20g00278 . . . . . . . . . . . . . . . Cone2ag0786 . Cone13ag0020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014398 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00278 Cpe_Chr20 FPKM 62.81916 66.153755 67.962173 67.613747 68.671715 78.465469 65.43914 83.41185 91.504524 81.606506