Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00287 ATGGGTTCCAGTTCCGATTCCTATTCGAACAATGATAATAACAACGCAGTAGGATGGAACAGAGCTGGGGGTTTGATTATGAAGACTTTGGTACTCTTTGGTGGTGCCCTTTTGCTTAAACGTCTCACTAAGTCCACAACGCGATGGGATCATGCCCGCTTCGTTTCTCAGTCCCTTTCTGGCGAGAAGTTTTCGAAGGAGCAAGCAGCTAGGGATCCTGAAAATTACTTCAATATTAGAATGGTTACGTGCCCTGCAGCAGAAATGATCGATGGTTCTACGGTATTATACTTTGAACAAGCATTCTCCAGAACTCCTCAAAAACCCTTTCGCCAGAGATTTTATACGGTGAAGCCTTGTTCAAAAGAGATGAAATGTGATGTGGAGTTGAGCTCATACGCCATTCGGGAAATGGAGGAGTACAAGAATTTTTGTGATCGGACAAAAGATCAACGTCCTCTTCCCGAAGAAATTGTTGGGGACATTGCAGAGCATTTAACTACGTTACATCTAAAGCGTTGTGATCGTGGAAAACGTTGCTTGTATGAAGGTTCTACTCCACCGGGCGGTTTTCCAAATTCATGGAATGGAGCAGCCTACTGTACTTCTGAATTATCCATCCTAAAGAATAATGAAGTACATACCTGGGAGAGGGGTTACGACGAAGATGGAAACCAGGTTTGGGGAACAAAAGAAGGACCTTACGAATTCAAGGCAGTTCCAGCCAACAGTCTCAAGGACATGTTTTCTCCATTAAATTTCTCTCAGCAGTCCATGGAGAAAAGAATAGAGGGCTCATTTGTCTTGCAATAA 813 43.42 MGSSSDSYSNNDNNNAVGWNRAGGLIMKTLVLFGGALLLKRLTKSTTRWDHARFVSQSLSGEKFSKEQAARDPENYFNIRMVTCPAAEMIDGSTVLYFEQAFSRTPQKPFRQRFYTVKPCSKEMKCDVELSSYAIREMEEYKNFCDRTKDQRPLPEEIVGDIAEHLTTLHLKRCDRGKRCLYEGSTPPGGFPNSWNGAAYCTSELSILKNNEVHTWERGYDEDGNQVWGTKEGPYEFKAVPANSLKDMFSPLNFSQQSMEKRIEGSFVLQ 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1590006 1594223 + Cp4.1LG20g02880.1 Cpe20g00287 486916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00287 270 Pfam CpeT/CpcT family (DUF1001) 56 238 IPR010404 GO:0016829|GO:0017009
Cpe20g00287 270 PANTHER BNAA01G14430D PROTEIN 11 270 - -
Cpe20g00287 270 PANTHER CHROMOPHORE LYASE CRL, CHLOROPLASTIC 11 270 IPR010404 GO:0016829|GO:0017009
Cpe20g00287 270 CDD CpcT 55 238 IPR010404 GO:0016829|GO:0017009
Cpe20g00287 270 Gene3D CpcT/CpeT domain 50 247 IPR038672 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00287 - - - csv:101207303 518.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe18g00742 Cpe20g00287 CCT
Cpe09g00940 Cpe20g00287 CCT
Cpe18g00742 Cpe20g00287 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00287 Cpe-Chr20:1590006 Cpe09g00940 Cpe-Chr9:8424009 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g6 . . . . . . . . Cmo13g00861 Cmo18g00240 . . . . . Cpe20g00287 . . . . . . . . . . . . . . . . . Cone13ag0271 Cone19ag0255 Lsi02g00530 Csa01g00993 Chy12g01141 Cme12g01559 . . . . . . . . Sed08g2406 . . Cma13g00832 . Car13g00675 Car18g00252 Cpe09g00940 . Bhi08g01543 Tan05g3015 Cmetu12g0056 Lac10g0616 Hepe07g2079 . . Cla03g00382 Cam03g0401 Cec03g0387 Cco03g0402 Clacu03g0400 Cmu03g1005 Cre03g0697 . . . .
Vvi17g365 . . Bda06g00492 Bda15g00655 Bpe12g00499 . . Bma12g00942 Cmo13g01080 . Cma10g00251 . Car10g00238 . Sed08g0332 Cpe20g00287 . Bhi02g00003 Tan09g1947 Cmetu02g0652 . . . . Cla06g01487 Cam06g1641 Cec06g1701 Cco06g1699 Clacu06g1607 Cmu06g1556 Cre06g2369 . . Cone13ag0300 . Lsi02g00165 . Chy12g01453 Cme12g01893 . Blo15g00364 . . Bpe07g00732 . . . Sed08g2165 Cmo10g00270 . Cma13g01039 . Car13g00871 . . Cpe18g00742 Bhi08g01210 Tan05g2291 Cmetu12g0125 Lac10g0217 Hepe07g2413 . . Cla04g01109 Cam04g1161 Cec01g1672 Cco01g1718 Clacu04g1189 Cmu04g1168 Cre01g1466 Lsi06g01349 Csa01g00361 Chy02g02382 Cme02g01766
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007065 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00287 Cpe_Chr20 FPKM 3.703422 3.006455 5.672978 6.287751 26.40633 27.377213 27.556499 6.43043 6.76156 6.835679