Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00289 ATGGATCGGAGGAGACCTGCTAGTCCAGTCTACGCCAGGCAGTGGAGTGGCGGCTCGAGCAGCACAGGATCGTCCTCTCCAGCCATGTCGCCGGCTCATCCTCAGTCTCGATTGGGTACGTCTTCCACCATTAAGCGCGCTCAGAATGTTGCTGCCAAGAAAGCGGCTGAACGTTTGGCTCAGGTCATGGCGCAGACCCCTGAGGATGATGATGAAGACGATGATCTCAACTTTCGATTCGCTGCCCCACCTCCTCCTCGTACTCACTCGTCTTATCAAAGTGTTGTTAATAGTAACAATACCAATTCGTTTCATACGATTTCGGGTCCCAGGATTAACAGATCTCCGTCCCCCGCGTTAGGTCGGAATTTCGTCGAGCATGTTCCTCAAGTTCGATCCACATCAGCTGGTAGATCATCGATGTCCGTGCGTTCCACACAGATCGTACCACCGAGTAAATCATCACTGAGAACTCCAGTCTCTATACCTCCAATTGAACCTCCTTCTAATAGGAATTCAGATAGAAGGTTTACACCAGATATCGGACAGGTGAACTCCAAAGATGCAGGAGATCAGCGGGAAGCTTCTGCACTACGTGATGAGCTTGATATGCTTCAAGAAGAGAATGAGAATTTACTCGAAAAGCTTCGACTAGCAGAAGATAAACGGGAAGAAGTGGAGGCTAGAGCTAGAATGCTAGAGAAACAGGTTGCTACTCTTGGAGAGGGTGTATCCTTGGAAGCTAAGTTATTGAGCAGGAAAGAAGCAGCCCTGCGTCAAAGAGAGGCTGCACTCAAAGCTGCAAAACCAACCAACGATAGTAGAAATGAAGAAATTGCTGCTCTTCGTTCAGAAATTGAGAACTTAAAAGATGAGTCATCAGCTGCTACAGAACAGCTCCGAGAAGCAGAGTCTGAAGCAAAGGCTCTACGTGTAATGACACAGAGAATGATTTTGACACAAGAAGAGATGGAGGAGGTTGTTTTGAAGAGGTGTTGGCTTGCTCGCTATTGGGGCTTAGCTGTTCAATATGGCGTATGTGCGGATATAGCAATCTCAAAACATGAGTATTGGTCTTCTTTTGCTCCTTTGCCATTCGAAGTTGTTATTTCTGCAGGACAGAAGGCTAAGGAGGAGCCTGAAGGTCGAAATGATCAAGATAGGAGTAAGCTCATCCAGGACTTAAATGATCTCTCCGGGGAAGGGAATATTGAGAGTATGCTTTCAGTTGAAATGGGATTGAGAGAATTAACATCTCTAAAGGTTGAAGATGCAACAGTGCTTGCATTGGCGCAACATAGGCGTCCAAGTTTGGTTCATCAATCTGATTCAAAAGCGTCTGCTGATCCGAAGTTTTCTGAGGCTTTTGAACTAAATGAAGCTGAAGCTGAAGATGTTCTCTTTAAGGAGGCTTGGCTTACATACTTTTGGAGAAGAGCCAAGGCATATGGTGTGGATGAGGATGTTGCAGATGAGCGCCTCCAGTTTTGGATCAGTCGTAGTGGGCAGCCTCCGACTTCACATGATGCTGTGGATGTTGAACGAGGTCTTGTAGAGCTCAGAAAACTTGGAATAGAACAACAGCTTTGGGAGGCATCTAGAAAGGAAATCGATCAATCTTCTGCATTCTCACTCAGTAATCACAAATCTGCAAAAGAGTTGGACACCTTATCCTGA 1677 46.27 MDRRRPASPVYARQWSGGSSSTGSSSPAMSPAHPQSRLGTSSTIKRAQNVAAKKAAERLAQVMAQTPEDDDEDDDLNFRFAAPPPPRTHSSYQSVVNSNNTNSFHTISGPRINRSPSPALGRNFVEHVPQVRSTSAGRSSMSVRSTQIVPPSKSSLRTPVSIPPIEPPSNRNSDRRFTPDIGQVNSKDAGDQREASALRDELDMLQEENENLLEKLRLAEDKREEVEARARMLEKQVATLGEGVSLEAKLLSRKEAALRQREAALKAAKPTNDSRNEEIAALRSEIENLKDESSAATEQLREAESEAKALRVMTQRMILTQEEMEEVVLKRCWLARYWGLAVQYGVCADIAISKHEYWSSFAPLPFEVVISAGQKAKEEPEGRNDQDRSKLIQDLNDLSGEGNIESMLSVEMGLRELTSLKVEDATVLALAQHRRPSLVHQSDSKASADPKFSEAFELNEAEAEDVLFKEAWLTYFWRRAKAYGVDEDVADERLQFWISRSGQPPTSHDAVDVERGLVELRKLGIEQQLWEASRKEIDQSSAFSLSNHKSAKELDTLS 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1601514 1614106 - Cp4.1LG20g03000.1 Cpe20g00289 486918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00289 558 MobiDBLite consensus disorder prediction 131 193 - -
Cpe20g00289 558 Coils Coil 272 313 - -
Cpe20g00289 558 MobiDBLite consensus disorder prediction 13 48 - -
Cpe20g00289 558 PANTHER MYOSIN 1 541 - -
Cpe20g00289 558 Coils Coil 195 236 - -
Cpe20g00289 558 MobiDBLite consensus disorder prediction 131 159 - -
Cpe20g00289 558 PANTHER FAS-BINDING FACTOR-LIKE PROTEIN 1 541 IPR040321 GO:0000911
Cpe20g00289 558 MobiDBLite consensus disorder prediction 87 109 - -
Cpe20g00289 558 MobiDBLite consensus disorder prediction 1 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00289 - - - mcha:111008730 966.837
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00943 Cpe20g00289 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01188 Cpe-Chr12:9735246 Cpe20g00289 Cpe-Chr20:1601514 0 dispersed
Cpe17g00939 Cpe-Chr17:7226284 Cpe20g00289 Cpe-Chr20:1601514 3.47E-118 dispersed
Cpe07g00928 Cpe-Chr7:8311225 Cpe20g00289 Cpe-Chr20:1601514 2.71E-121 transposed
Cpe20g00289 Cpe-Chr20:1601514 Cpe09g00943 Cpe-Chr9:8437321 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g34 . Blo16g00288 . . . Bpe13g00185 Bma06g00282 . Cmo13g00860 . . . . . . Cpe20g00289 . . . . . . . . . . . . . . . . . Cone13ag0253 Cone19ag0238 Lsi02g00526 Csa01g00989 Chy12g01145 Cme12g01564 . . . . . Bpe15g00237 Bma03g01224 . Sed08g2408 . . Cma13g00829 Cma18g00295 Car13g00672 Car18g00248 Cpe09g00943 . Bhi08g01536 Tan05g3009 Cmetu12g2124 . Hepe07g2083 . . Cla03g00378 Cam03g0398 Cec03g0384 Cco03g0399 Clacu03g0397 Cmu03g1002 Cre03g0694 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001793 1 3 3 3 2 1 4 2 2 2 0 1 3 2 2 1 2 3 4 2 2 4 2 2 2 2 2 4 3 3 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00289 Cpe_Chr20 FPKM 40.862705 48.642296 106.549065 107.72641 36.193848 32.283791 35.506889 26.93891 27.092705 27.203072