Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00290 ATGGCAGCTTTTTCATATCAATACCAACCGATTCTTCTCGACTCCATGTTCTTCCCCAACAATCCCTTCAAAATGGGAGGCTTTTTGGATGACCCAAATTTCAACACCATTCAAGAACAACAACAACAACCCATTTACCATTTCGCCGACATCTCCAACCAAACCCCTGAATCTTCCACTTTGGTCGACAGATCCGACAGCGCCGACCCGCCGGCTGTCACTGTCACCGTCACTTCCCCTTGTAGTAAGAAAAGGAAGAGCCGGAATACTTCCTCCGCCACCTCCGCCCAATCCAAGGAGAGCACCGGAAAGAAGCAGAAAAGTAAAGGGGAATTAGATGAACATAAAGAAGAAGATCCAAAGCCCAAAAATGGGAAGAAAGAGGAGAAAAATGTCTCAGACGGTGCAGCAACTAAAGGCTACATTCACGTCAGAGCTCGAAGGGGCCAAGCCACTGACAGCCACAGTCTAGCCGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACATTACAACGACTTGTTCCTGGTTGCGACAAGGTTACAGGGAAGGCCCTGATGTTGGATGAAATTATAAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGATTTGGACGGCCTTATGATTCAACCAGAGACGCCGTCGTTGAGTAGTATAACGCCACAGCTTCCGGCGATGGCTCAATGCAGCCGAGCGGTGATCGACACCACCCCTCCGACCACCCAAACTCCGCCAGTCTCCGCCCCAAATAACTATCCCTTAATGGACCCTTCAGCTAATAATATGTTTCTAATGAGCCCGGCCGCCTACTCCCCTTCATCTCAGGATTATGTTAAGGTTTCATCATGGGATGTCGAAGAACAGAAACGAAAGCTTCTAATTTCATCGGGAATTGGCGATAACTTGTGTTACTTCCATTGA 984 47.05 MAAFSYQYQPILLDSMFFPNNPFKMGGFLDDPNFNTIQEQQQQPIYHFADISNQTPESSTLVDRSDSADPPAVTVTVTSPCSKKRKSRNTSSATSAQSKESTGKKQKSKGELDEHKEEDPKPKNGKKEEKNVSDGAATKGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPETPSLSSITPQLPAMAQCSRAVIDTTPPTTQTPPVSAPNNYPLMDPSANNMFLMSPAAYSPSSQDYVKVSSWDVEEQKRKLLISSGIGDNLCYFH 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1619873 1621903 + Cp4.1LG20g02900.1 Cpe20g00290 486919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00290 327 CDD bHLH_AtBPE_like 140 225 - -
Cpe20g00290 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 216 IPR036638 GO:0046983
Cpe20g00290 327 SMART finulus 156 206 IPR011598 GO:0046983
Cpe20g00290 327 MobiDBLite consensus disorder prediction 102 134 - -
Cpe20g00290 327 MobiDBLite consensus disorder prediction 56 158 - -
Cpe20g00290 327 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 327 IPR024097 GO:0006355
Cpe20g00290 327 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 327 - -
Cpe20g00290 327 MobiDBLite consensus disorder prediction 56 101 - -
Cpe20g00290 327 Pfam Helix-loop-helix DNA-binding domain 154 201 IPR011598 GO:0046983
Cpe20g00290 327 Gene3D - 147 217 IPR036638 GO:0046983
Cpe20g00290 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 200 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe18g00931 Cpe20g00290 CCT
Cpe09g00944 Cpe20g00290 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00290 Cpe-Chr20:1619873 Cpe17g01125 Cpe-Chr17:8540065 7.87E-45 dispersed
Cpe18g00931 Cpe-Chr18:8230223 Cpe20g00290 Cpe-Chr20:1619873 2.41E-45 wgd
Cpe20g00290 Cpe-Chr20:1619873 Cpe09g00944 Cpe-Chr9:8454037 9.01E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51113 PF00010 HLH 6.10E-07 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00290 - - cmax:111495225 552.747