Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00292 ATGGGTTGCGTTCTTGGCAGACAAGCCGCCGACGGTCGCCGGAGCGCATCCGGACCTCCTCGTCGTCGCCGGAGTACGGATCACCACTCTCATAGCGATGGAGTTAATGGTGAGAGAGTTAAGAAACAAACGACTACGGCGGAAAACCAGGGAGTTCGGCAGGACGTGGATTCCTTGTCCCTAGAGCGTCGGAGGCCTTCATCAGGCATTTGCCAAAGGAATGAGCAAGGTTGGCCGTCGTGGCTTCTGGCAGTAGCCGGCGAGGTGATCCAAGGATGGACGCCTCGTCGAGCCAATACGTTTGAGAAGCTTGCTAAGATTGGGCAAGGGACGTATAGCAATGTGTACAAGGCGAGGGATCTTATTACTGGGAAAATTGTTGCTCTGAAGAAGGTTAGGTTTGATAATTTAGAACCAGAGAGCGTAAGGTTTATGGCCAGAGAGATTTTGGTCCTGAAATGCCTCGATCATCCCAATGTGCTTAAGCTTGAAGGCTTAGTTACTTCGAGAATGTCGTGTAGTCTTTACTTAGTGTTCGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAGTTCACAGAGCCTCAGGTCAAATGCTACATGAAGCAACTATTGTCCGGGCTTGAGCACTGCCACAACCGAGGTGTTTTGCATCGTGATATAAAGGGTTCCAATTTGCTAATTGATAACGAAGGAGTACTGAAAATAGCTGATTTTGGGTTAGCTACTTTCTTTGATCCTGAGCAGAAGCAGAATATGACTAGTCGAGTTGTAACGCTTTGGTACCGCCCACCTGAACTATTGCTTGGAGCTACTCTTTATGGTATAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTTGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTCGAACAACTTCATAAGATATTTAAATTATGTGGTTCTCCATCTGAGGATTACTGGAAGAAGTACAAATTGCCAAATGCAACTCTGTTTAAACCCCAGCAACCATACAAACGCTGCATTGTGGAAACGTTCGAAGATTTTCCATCTTCGTCTCTACCCCTTATCGAATCTCTCCTTACAATGGACCCCGACGGGCGAGGTACTGCCACTGCTGCTCTGAATAGCGAATTCTTTACAACCGAGCCTCTTGCTTGTGAACCATCAAGTCTGCCTAAATATCCTCCTAGCAAAGAATTGGATGTAAAATTGAGAGACGAAGAAGCTAGAAGGCAAAGAGGTCTAAGTGGGAAAGCAACAGCTGCTGATGGTGGTGGCAGGAGAGTAAGAGTTCGGGATCGAGTTGGTCGGGCTGTCCCAGCTCCTGAAGCCAATGCAGAGATGCAATCAAACTTGGATAGGTGGAGAAATGTGACAAAAGCAAATGGTAAGAGCAAGAGCGAGAAGTTCCCCCCGCCTCATCAAGATGGGGCAGTGGGGTACCCGCCACATGAGACATCCCAGAGGAGCCATTTTTCATTTGGTGCAGCTGGTACTTCCTTCAGCTCCTCAATTTTTAATTCAAAATCTGGATCTGTGAAAAGCACAGGAGCTCCTGGGGGGACTTCTCGGAGGAAGAAAGCGGATGAAGATAACCCATCAGTGTCTTCATCTGGAAAATTCATCCGTGCACTGAAGCCATCAATCGGGTTATCAATGGATCTTTTGTTTAGAGGTAAATAG 1701 48.15 MGCVLGRQAADGRRSASGPPRRRRSTDHHSHSDGVNGERVKKQTTTAENQGVRQDVDSLSLERRRPSSGICQRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKCLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGVLKIADFGLATFFDPEQKQNMTSRVVTLWYRPPELLLGATLYGIGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWKKYKLPNATLFKPQQPYKRCIVETFEDFPSSSLPLIESLLTMDPDGRGTATAALNSEFFTTEPLACEPSSLPKYPPSKELDVKLRDEEARRQRGLSGKATAADGGGRRVRVRDRVGRAVPAPEANAEMQSNLDRWRNVTKANGKSKSEKFPPPHQDGAVGYPPHETSQRSHFSFGAAGTSFSSSIFNSKSGSVKSTGAPGGTSRRKKADEDNPSVSSSGKFIRALKPSIGLSMDLLFRGK 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1630422 1634652 + Cp4.1LG20g02910.1 Cpe20g00292 486921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00292 566 MobiDBLite consensus disorder prediction 1 72 - -
Cpe20g00292 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Cpe20g00292 566 MobiDBLite consensus disorder prediction 16 38 - -
Cpe20g00292 566 CDD STKc_CDK9_like 101 385 - -
Cpe20g00292 566 SUPERFAMILY Protein kinase-like (PK-like) 94 390 IPR011009 -
Cpe20g00292 566 MobiDBLite consensus disorder prediction 511 547 - -
Cpe20g00292 566 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Cpe20g00292 566 Gene3D Transferase(Phosphotransferase) domain 1 184 424 - -
Cpe20g00292 566 MobiDBLite consensus disorder prediction 39 56 - -
Cpe20g00292 566 MobiDBLite consensus disorder prediction 511 525 - -
Cpe20g00292 566 SMART serkin_6 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00292 566 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 57 529 - -
Cpe20g00292 566 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
Cpe20g00292 566 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00292 566 PANTHER CELL DIVISION PROTEIN KINASE 57 529 - -
Cpe20g00292 566 MobiDBLite consensus disorder prediction 415 497 - -
Cpe20g00292 566 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00946 Cpe20g00292 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00215 Cpe-Chr8:1430904 Cpe20g00292 Cpe-Chr20:1630422 0 dispersed
Cpe09g00946 Cpe-Chr9:8476261 Cpe20g00292 Cpe-Chr20:1630422 0 dispersed
Cpe11g00928 Cpe-Chr11:7792142 Cpe20g00292 Cpe-Chr20:1630422 0 dispersed
Cpe16g00777 Cpe-Chr16:7693043 Cpe20g00292 Cpe-Chr20:1630422 2.41E-163 dispersed
Cpe16g00933 Cpe-Chr16:8608624 Cpe20g00292 Cpe-Chr20:1630422 8.37E-116 dispersed
Cpe20g00291 Cpe-Chr20:1628395 Cpe20g00292 Cpe-Chr20:1630422 9.41E-147 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63079 PF00069 Pkinase 3.10E-67 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00292 K08819 - csv:101205716 971.074