Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00296 ATGAATATCCTTCACACCTTTCTGAATTTAGTCGCTCCACCCTTTACTTTCATTTCCCTCTTCCTTTTACTACCGCCTTATCAAGCTTTCAAATCATTTCTCTCTTTGATTGGTTTTCTGTTCACGGAAAATGTCGACGGAAAGGTGGTTCTTATCACCGGCGCTTCCTCCGGCATCGGCGAGCATTTGGCGTATGAGTATGCGAAGAGAGGGGCTTGCTTAGTGCTTGTGGCTAGACGAGAGAATCTACTGGAAGAAGTTGCAGACATAGCTCGGTATTATGGATCACCAGATGTAATCACCATTCGAGCTGATGTTTCGAAGTTTGAAGATTGTCGGCGGGTTATGAACGAGACGATGAATCATTTTGGGAGATTGGATCATTTGGTGAACAATGCGGCGATTACCCATTTGGTGATGTTTGAAGACATTGCCGATATTGCTGCCAGAGGGAAGATCGTGGCGCTGTCAGCTCCTCCGGCGTGGATGCCGGCGCCGAGAATGAGCATTTACAATTCGAGCAAGGCGGCGATTAAGACCATGTTCGAGACACTGAGAGTGGAGCTGGCACCGGAGATCGGTGTCACGATCGTTACTCCTGGCTTCGTTGAATCTGAGTTAACCAAAGGCAAAGCATTGAACGCTCAAGGCAAAATGGAGCTTCGTCAGGACATGAGGGATGCGTTGATAGGGTTGGTACCAGTGGAGACGGCGGAGGCATGCGCGAAGGCGGTGGTGAAGGGGATATGCAGGGGACAGAGGTACGTGACAGAGCCGTCGTGGTACGATGTCCTGTATTACTGGAAGGCGTTTTGCCCGGAGATAGTGGAGTGGTGCTACCGGATATTGGCTATGCCGGCGGCGGGAGCTTCGGAATCGGACGCCCTGACCAAGCAGGCGCTTGATTATACGGGTGCTAATATTTTGAAGGTCATAATCGACCGCATATCTCAAACAGCCTTCCCCTTCATCTACCCAATTTACTTCTTCTTCAAGTTCATTTCCTTCATAATAAGGTCCATTTCCGCCGAAGATGTCGCCGGAAAAGTCGTTCTCATCACCGGAGCATCCTCCGGCATCGGCGAGCATCTGGCGTACGAGTACGCTAAAAGAGGAGCTTATTTGGCGCTGGTTGCCAGAAGGGATCATCGGCTCCGGGATGTTGCTGATGTGGCAGAGATTTTGGGGTCGCCCTATGCTCTCGTCATCCATGCCGATGTTTCTAACCTTGATGATTGCCAACGATTGGATCACTTGGTTAACAATGCTGGGATTACCAGCATCAACTTGTTTGAAGAATATGTGGATCCCAGAAATATTGCATCAGTAATGGACACAGATTTCTGGGGAACGGTTTATTGCACTTACTACGCAATTCCGTACTTAAAACAAACCCGAGGGAAGATCATCGGAATCGCTTCCTCCGCGGCATGGCTCCCCACGCCCCGCCTGAGCTTTTACAGTGCAAGTAAAGCAGCTGTGATAAGCTTCTATGAGACATTGAGAGTGGAAATTGGAAGTGAGATTGGAATTACGGTTGTGACGCCGGGGTTGATTGAATCGGAGATGACGAAAGGGAAATTCATGTTCGAAGATGGGAAGATGTACATTGATCAAGAATTGAGAGACGCTGTAATGAGCGTGATGCCGATAGAACCGGTGGGCGGTGCGGTGGAAGCGATGTTAAGGGCGGGTTGTAGAGGAGATGAGTACGTGACGGAACCGCCGTGGTTGAGGATGTCGTTTTACTGGAAGATGTTTTTGCCGGAGGTGGTGGAATGGTTGAATTACTTGTTTATAATGACCGGAAGTTCCCCGACCGACACATTTGGGAAATGGCTGCTTGAGCTCACTGGATTGAAGCCCCTTATTTATCCACCTTCTGTTCGATCGCCGGAACTCGGAATACAAATAGGAGTGTACCCAAATATA 1932 49.17 MNILHTFLNLVAPPFTFISLFLLLPPYQAFKSFLSLIGFLFTENVDGKVVLITGASSGIGEHLAYEYAKRGACLVLVARRENLLEEVADIARYYGSPDVITIRADVSKFEDCRRVMNETMNHFGRLDHLVNNAAITHLVMFEDIADIAARGKIVALSAPPAWMPAPRMSIYNSSKAAIKTMFETLRVELAPEIGVTIVTPGFVESELTKGKALNAQGKMELRQDMRDALIGLVPVETAEACAKAVVKGICRGQRYVTEPSWYDVLYYWKAFCPEIVEWCYRILAMPAAGASESDALTKQALDYTGANILKVIIDRISQTAFPFIYPIYFFFKFISFIIRSISAEDVAGKVVLITGASSGIGEHLAYEYAKRGAYLALVARRDHRLRDVADVAEILGSPYALVIHADVSNLDDCQRLDHLVNNAGITSINLFEEYVDPRNIASVMDTDFWGTVYCTYYAIPYLKQTRGKIIGIASSAAWLPTPRLSFYSASKAAVISFYETLRVEIGSEIGITVVTPGLIESEMTKGKFMFEDGKMYIDQELRDAVMSVMPIEPVGGAVEAMLRAGCRGDEYVTEPPWLRMSFYWKMFLPEVVEWLNYLFIMTGSSPTDTFGKWLLELTGLKPLIYPPSVRSPELGIQIGVYPNI 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1657742 1663218 - Cp4.1LG20g02990.1 Cpe20g00296 486925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00296 644 PANTHER RETINOL DEHYDROGENASE-RELATED 1 148 - -
Cpe20g00296 644 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 1 148 - -
Cpe20g00296 644 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 149 305 - -
Cpe20g00296 644 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 307 629 - -
Cpe20g00296 644 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 282 IPR036291 -
Cpe20g00296 644 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 414 425 IPR002347 -
Cpe20g00296 644 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 467 475 IPR002347 -
Cpe20g00296 644 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 487 506 IPR002347 -
Cpe20g00296 644 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 345 600 IPR036291 -
Cpe20g00296 644 Gene3D - 147 285 - -
Cpe20g00296 644 Gene3D - 336 602 - -
Cpe20g00296 644 Gene3D - 40 146 - -
Cpe20g00296 644 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 158 186 IPR020904 GO:0016491
Cpe20g00296 644 PRINTS Glucose/ribitol dehydrogenase family signature 350 367 IPR002347 -
Cpe20g00296 644 PRINTS Glucose/ribitol dehydrogenase family signature 507 524 IPR002347 -
Cpe20g00296 644 PRINTS Glucose/ribitol dehydrogenase family signature 461 477 IPR002347 -
Cpe20g00296 644 PRINTS Glucose/ribitol dehydrogenase family signature 414 425 IPR002347 -
Cpe20g00296 644 PRINTS Glucose/ribitol dehydrogenase family signature 487 506 IPR002347 -
Cpe20g00296 644 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 474 502 IPR020904 GO:0016491
Cpe20g00296 644 Pfam short chain dehydrogenase 48 146 IPR002347 -
Cpe20g00296 644 Pfam short chain dehydrogenase 349 527 IPR002347 -
Cpe20g00296 644 Pfam short chain dehydrogenase 149 211 IPR002347 -
Cpe20g00296 644 PANTHER RETINOL DEHYDROGENASE-RELATED 149 305 - -
Cpe20g00296 644 PANTHER RETINOL DEHYDROGENASE-RELATED 307 629 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00296 K22418 HSD1; 11beta/17beta-hydroxysteroid dehydrogenase [EC:1.1.1.146 1.1.1.-] - csv:116402488 545.814
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00716 Cpe-Chr11:5371890 Cpe20g00296 Cpe-Chr20:1657742 1.26E-13 dispersed
Cpe20g00296 Cpe-Chr20:1657742 Cpe18g00067 Cpe-Chr18:1694335 1.52E-07 dispersed
Cpe06g01002 Cpe-Chr6:10148109 Cpe20g00296 Cpe-Chr20:1657742 2.16E-49 transposed
Cpe20g00296 Cpe-Chr20:1657742 Cpe09g00950 Cpe-Chr9:8511387 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g78 . . . . . . . . Cmo13g00851 Cmo18g00230 . . . . . Cpe20g00296 . . . . . . . . . . . . . . . . . . . Lsi02g00518 Csa01g00980 Chy12g01152 Cme12g01573 . . . . . . Bma03g01242 . Sed08g2421 . . Cma13g00820 Cma18g00306 Car13g00664 Car18g00241 . . Bhi08g01520 Tan05g2993 Cmetu12g1667 Lac10g0600 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000732 2 6 3 2 1 3 2 3 3 3 1 3 4 4 4 4 3 1 2 3 3 5 4 4 3 3 4 2 4 4 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00296 Cpe_Chr20 FPKM 0.0 2.582627 4.309685 0.0 6.256787 7.169086 0.0 0.0 0.0 0.0