Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00300 ATGGCGCCGTCAACTTCAGGATCATCAAAGAGAGCCAGAGGAGCTCACAGTGGCGCCATTCAGCCAGTTTCTTGCCTTGTCGATGGCTGCAATTCAGATCTAAGCAACTGTAGAGACTACCACAGGCGCCATAAGGTCTGTGAGCTGCATTCCAAGACTCCTCAGGTCACAATCGCTGGCCTCAACCAGAGATTTTGCCAGCAGTTTCATTCACTTGAGGAATTTGACGAAGGAAAGAGAAGCTGCCGGAAACGACTGGACGGCCACAACCGGCGGCGGAGAAAGCCTCAAACTGACCTCTTGCCTCGATCTGGTGGCCATTTCTCCTATCATCAAGGTGCCCATTTGTTGCCATTTACAAGCTCGCAAGTTTTTCCACCGACCACTTTGAGCAGCCACGGGTGGTCGTCTGCAGGAGATCCCTCCGTCTTCCACAACCAGAACCAAGAACTCAATTTTCTCGAAAAACAGAGGCTTTTTGTGGAACCATCCAGCTACAAAGCGGCGCAACCACTGGGGTTCTTGCATGGCGGCCCGACAACATGCCGACCACTTCTCCGGAGTATCAATACCCTGTCGGAAAACACCGGCGGCGAAAGGAACAAGATGGTTTACTACAGATTCAGAGTTGGAGTTAGTGAATCAGATTGTGCTCTCTCTCTTCTGTCATCGTCACAGCAGGCCGCCGACAATGGTTCTTCTGGGCATTTGGGTTTGAGCATAATCGAACAAGAACAGCAACAGCGTAGCGCCGCCATTTCTCTGCTGCAGCCATTGAGCCACCACCACCACCATAAACTCGACAGTTTTGAGAATTCTGAGTCTTCTTCGGTTCATGGGGCTGTTAATTTCCCCGAGATCTTTGGAATTCCCTCCGAGAATGCTGGAAATCAATCCCCTTCCACTCTTCCTTTTCACTGGGAGTAA 927 50.92 MAPSTSGSSKRARGAHSGAIQPVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIAGLNQRFCQQFHSLEEFDEGKRSCRKRLDGHNRRRRKPQTDLLPRSGGHFSYHQGAHLLPFTSSQVFPPTTLSSHGWSSAGDPSVFHNQNQELNFLEKQRLFVEPSSYKAAQPLGFLHGGPTTCRPLLRSINTLSENTGGERNKMVYYRFRVGVSESDCALSLLSSSQQAADNGSSGHLGLSIIEQEQQQRSAAISLLQPLSHHHHHKLDSFENSESSSVHGAVNFPEIFGIPSENAGNQSPSTLPFHWE 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1684871 1686762 + Cp4.1LG20g02930.1 Cpe20g00300 486929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00300 308 Pfam SBP domain 25 95 IPR004333 GO:0003677
Cpe20g00300 308 ProSiteProfiles Zinc finger SBP-type profile. 22 96 IPR004333 GO:0003677
Cpe20g00300 308 SUPERFAMILY SBT domain 23 101 IPR036893 GO:0003677|GO:0005634
Cpe20g00300 308 MobiDBLite consensus disorder prediction 85 105 - -
Cpe20g00300 308 MobiDBLite consensus disorder prediction 289 308 - -
Cpe20g00300 308 Gene3D - 16 83 IPR036893 GO:0003677|GO:0005634
Cpe20g00300 308 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 1 308 - -
Cpe20g00300 308 MobiDBLite consensus disorder prediction 292 308 - -
Cpe20g00300 308 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 308 IPR044817 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00300 - - - cpep:111802519 436.417
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00953 Cpe20g00300 CCT
Cpe09g00953 Cpe20g00300 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00300 Cpe-Chr20:1684871 Cpe04g01447 Cpe-Chr4:11562242 4.59E-32 dispersed
Cpe18g00914 Cpe-Chr18:8150876 Cpe20g00300 Cpe-Chr20:1684871 8.57E-83 wgd
Cpe20g00300 Cpe-Chr20:1684871 Cpe04g01623 Cpe-Chr4:12582134 1.30E-60 wgd
Cpe20g00300 Cpe-Chr20:1684871 Cpe09g00953 Cpe-Chr9:8542517 2.26E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g97 . . . Bda15g00631 . . . . . . . . . . . Cpe20g00300 . Bhi02g00671 Tan09g2020 . . . . . . . . . . . . . . . . Lsi02g00513 . Chy12g01157 . . . . . . . . . . . . . . Car13g00660 . Cpe09g00953 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011451 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 0 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51114 PF03110 SBP 3.70E-26 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00300 Cpe_Chr20 FPKM 6.895238 4.221283 20.883066 22.465406 2.287741 0.0 2.280492 2.158853 1.932328 1.614568