Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00309 ATGGCGGTTTCATTGAGCGATGTCAAGTCGGCTGCCGGTCTAAAAAAACTCGATGACTACTTGCTCAGTCGTAGCTACATTTCTGGGTATCAAGCTTCGAAGGATGATATTGCTGTTTACGAAGCTCTATCCAAACCCGTTTCTAGCGACTATGTCAACGTATCTAGGTGGAGCAATCACATCGAAGCACTCTTGAGAGTCTCTGCTGTTTTTGGAGAGGGTTCCGGCGTTAAGTTCGATTCTGCAGAAGCAATTGCAACTCCACCAGCTGCTGATGCCAAGGCTAGCGGTGCTGATGACGACGACGACGATATGGATCTATTTGGCGAAGAGACTGAAGAGGAAAAGAAGGCCGCCGAGGAGCGTGCAGCTTCCATAAAGGCTTCATCAAAGAAGAAAGAGAGTGGCAAATCATCAGTTCTGATGGATATCAAACCTTGGGATGATGAAACTGACATGAAGAAACTTGAAGAGGCTATAATGCTCACAATTGTTGATGACCTTGTGTCCGTTGACGCACTCATTGAAGAATATTTGACAGCTGAACCCATAAACGAAGGTCAGCTTCTATCGAGCCCAAGAGCAGGCTTGCCCGAGCAGGATGAGAGCTTTCTCTGGTTCGTAGTTGTTGATCGAGGACCGGGGAAAGAGAAGCGAGGAGGAAGAAGAAGCGAAAACGCCATGCCGAAGAGAACAACGCATACATACTCGAGCGAGGACGCCGCACCAGATGGACCAGATTCTGATCTCTTCGTTTACTACTGCAAGCATTGTGGATCGCACAAAATGCCAAAAAGGAAGACAGACAAGGCTTTTGTGTTGGACAAGAAGAAACATCTTGCAAGGTTAAATGTCAATGAGGCGGGAAAAGTTCTATTGAAAAGGGGTGAAGGGAAACTTGAAAGGCAATACCGCATGAACTGTCTAGGCTGTGGACTCTTGGTGTGTTATCGCTCAGAGGAAGATTTGGAATTTGCTTCTTTCATTTATGTTGTTGATGGTGCACTCAGTACTGTGGCTGCCGAAACCAATCCACAGGATGCTCCTGTGCCACCCTGTATATCTCAACTTGAAGGAGGACTTGTCCAAGTGGCCATAGAAGTTGAAGATCGAGCACAGCGCTCAGCAATCACAAGAGTAAATGCTGATGATGTACGTGTTGCTGTTGCTGCGCCTGCAGCCCGGGGAGAAGCCAACAATGAGCTTTTGGAGTTCATGGGAAAAGTCTTAGGACTGAGGCTTAGCCAAATGACTCTCCAACGGGGATGGAATAACAAATCGAAGCTTCTTGTGGTTGAGGATTTGTCTGCCAGACAGGTGTATGAAAAGCTTCTCGCGTCTGTGCAACCTTGA 1353 47.23 MAVSLSDVKSAAGLKKLDDYLLSRSYISGYQASKDDIAVYEALSKPVSSDYVNVSRWSNHIEALLRVSAVFGEGSGVKFDSAEAIATPPAADAKASGADDDDDDMDLFGEETEEEKKAAEERAASIKASSKKKESGKSSVLMDIKPWDDETDMKKLEEAIMLTIVDDLVSVDALIEEYLTAEPINEGQLLSSPRAGLPEQDESFLWFVVVDRGPGKEKRGGRRSENAMPKRTTHTYSSEDAAPDGPDSDLFVYYCKHCGSHKMPKRKTDKAFVLDKKKHLARLNVNEAGKVLLKRGEGKLERQYRMNCLGCGLLVCYRSEEDLEFASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVAVAAPAARGEANNELLEFMGKVLGLRLSQMTLQRGWNNKSKLLVVEDLSARQVYEKLLASVQP 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1735866 1742591 - Cp4.1LG20g03130.1 Cpe20g00309 486938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00309 450 Pfam Uncharacterised ACR, YggU family COG1872 362 433 IPR003746 -
Cpe20g00309 450 MobiDBLite consensus disorder prediction 111 131 - -
Cpe20g00309 450 Hamap UPF0235 protein YggU [yggU]. 358 446 IPR003746 -
Cpe20g00309 450 Gene3D - 351 448 IPR036591 -
Cpe20g00309 450 PANTHER OS07G0295200 PROTEIN 228 450 - -
Cpe20g00309 450 SMART DUF167_2 358 434 IPR003746 -
Cpe20g00309 450 Gene3D - 130 161 IPR014717 -
Cpe20g00309 450 MobiDBLite consensus disorder prediction 214 242 - -
Cpe20g00309 450 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 101 109 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cpe20g00309 450 Gene3D - 2 75 - -
Cpe20g00309 450 SUPERFAMILY YggU-like 351 437 IPR036591 -
Cpe20g00309 450 SUPERFAMILY GST C-terminal domain-like 10 69 IPR036282 -
Cpe20g00309 450 SUPERFAMILY eEF-1beta-like 134 185 IPR036219 -
Cpe20g00309 450 MobiDBLite consensus disorder prediction 214 229 - -
Cpe20g00309 450 Coils Coil 109 129 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00964 Cpe20g00309 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00966 Cpe-Chr9:8622220 Cpe20g00309 Cpe-Chr20:1735866 2.21E-66 transposed
Cpe20g00309 Cpe-Chr20:1735866 Cpe09g00964 Cpe-Chr9:8603047 3.68E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00309 - - csv:101215962 407.527