Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00310 ATGGTTTCAACGAGAAGGAGTGGATCTCTCTCTGGAAGCAACAGCAAAAGATCTTCGTCCTCCGAGGATAAGCCATCGTCACCGAAGCGTCAAAAGGTGGAAAATGGCTGTGGTTCAGAGAAATCGATGCCGGTGGTGGAGAATTCTAAAGAATTATGCACCCCGCCGACTGTGGATCCTGGAGATAATGGACCTGGCGGTGGTCCGATCGCCGGAGTTGACGTTGGAGAAGGTGTGAGCTCTTTGAAGGAGGATGCTGCACCAGCGGCTGTCGCTGTTACCACTCCTATCGCCGAGGGAACTTCGCTGGTGGGGGATAAGCCTAGGAGTTCATTTTCATCTTGGAGTCTCTATGCTGCGAAGCAGAATCCAAATTTTGAGACGACAACTCCTTGGTGTAGGCTTCTATCACAGTTCGGTCAGAACCCCAATGTTGATATTTTCTCGTCAAATTTTACCATTGGTTCTAGTAGAGGTTGCAACTTTCCCTTGAAGGATCACACGATTAGCGGGACACTATGCAAGATCAAGCACACTCAGCGTGAGGGTAGTGCTGTAGCAGTGCTTGAAAGTACGGGAGGCAAGGGATCGGTGATGGTTAATGGGTTGACCGTCAAGAAGAGCTCCAGCTGTGTGCTAAATTCTGGTGACGAAGTGGTCTTTGGTGCTTTGGGGAACCATGCTTATATATTTCAGCAACTTATGAATGAGGTTTCTGTTAAAGGTTTAGATGTTCAAAGTGGTGTGGGAAAATTCTTGCAGCTCGGAAAGAGGACTGGTGATCCTTCTGCTGTGGCTGGGGCCTCGATATTGGCATCTCTTTCAAGCCTCAGGCAGGATATATCACGTTGGAAGCCTCCCTCTCAGACCAGCGGTAAAACACACCAAGGTGCTGAACTTCCTTCTAATTCTGTTGTTCATGATGCAATGGAACTTGAAATTGATGCTCTTGAAGCCAACTCAAATCCAGAAGTACGAAATGACAAAGCTGTAGACTCAAGCACCACTAGCAGGAATCTTCATCCCGGCTCCAATCCAGATGCTCTCATAGAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTGATAGGGCCTTTGTTCAGGATGTTAGCTCAGTCAACTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTAATGGAAGAAAGAAACCAGTGGATTGGGGAGTTGCAGCCAGCATCAACCTCAGGAATGTCTTTGCGGTGTGCAGCATTTAAAGAAGATGTTCATGCAGGAATTGTTGATGGAAGAGACTTAGAAGTTTCATTTGAGAACTTTCCATACTATTTGAGTGAGAATACGAAGAACGTGCTTATTGCTGCTTCTTACATACACTTGAAGCATAAAGAACATTCAAAGTATGCCTCAGAATTAAATACAGTGAATCCACGAATTCTACTTTCTGGTCCTGCTGGTTCAGAGATATATCAAGAGATGCTAGCGAAGGCACTTGCCAACTACTACGGAGCAAAGCTACTCATATTTGACAGCCATTCATTTTTGGGTGGTTTATCATCAAAGGAAGCAGAGCTGCTGAAGGATGGAGTTAATGCAGCAAAGTCTTGTAGTTGTTCAAAACAGAGTACCGTATCTACTGAGACCACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACTCCAAGCTCTTCAAATGCTACTTTAACCGCCCCTGATTCCCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTGGGACAGCAAAGAATAACTTTTTAAAAATTGGTGATAGAGTAAAATTTATAGGTTCAGCTTCTGGTGGGATATATCCAGCAACATCTCCCACAAGGGGCCCACCCAATGGAACTCGCGGAAAGGTTGTATTAACTTTTGATAACTCTTCATCAAAAATTGGTGTTAAGTTTGATAAACTTATACCTGATGGAGTTGATCTTGGGGGATATTGTGAAGGAGGCTATGGATATTTCTGTTATGCAACCGATCTACGTTTGGAGAACTCTGGCGTGGAAGAATTGGATAAGATTCTTATTGATATTTTATTTGAGGCAGTATTTAGTGAAAGCAGAAATTCTCCTTTCATTTTGTTCATGAAAGATGCTGAGAAGTCTCTTGTTGGAAATTTAGATTCCTATTCTACTTTTAAAAGTAGACTGGAAAAGCTTCCCGACAATGTTATAGTAATTGGCTCTCATACTCATACTGACAACCGCAAGGAGAAGTCGCATCCCGGTGGCTTGCTTTTCACGAAATTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCATTTCCGGATAGTTTTGGAAGACTGCATGATAGAGGGAAGGAAGTTCCAAAAGCAACAAAACTTCTTACTAAACTATTTCCCAACAAAGTTACAATCCACATGCCGCAGGATGAGGGCCTTCTTGTATCATGGAAGCACCAGTTAGAACGAGATGCCGAAACTCTTAAAATGAAGGGAAATCTTAATCAATTGCGCGTTGTTTTGAGTAGGAGTGGAATGGACTGTGAAGGTCTAGAGACATTATGCATCAAGGATCAAACACTTACGAATGAGAGTGCAGAGAAGGTAGTTGGATGGGCCTTGAGCCATCATTTAATGCAGAATCTAGAAGCCGATCCTGATTCTAGAATTCTTTTATCTTGTGAGAGCATTCAATATGGGATCAGCATCTTACAGGCTATCCTGAATGAATCTAAATGCATGAAGAAGTCACTTAAGGATGTTGTTACAGAGAATGAATTTGAGAAAAGGCTTCTAGCAGACGTTATCCCACCCAGTGATATAGGAGTAACATTTGATGATATTGGAGCTCTTGAAAATGTGAAGGATACTCTAAAGGAGTTGGTGATGCTTCCTTTACAAAGGCCCGAACTTTTCTGCAAGGGACAATTGACAAAGCCATGCAAAGGCATTCTGTTATTTGGTCCACCTGGAACAGGTAAGACGATGCTCGCAAAAGCTGTGGCTACTGAAGCTGGTGCAAATTTTATCAACATTTCCATGTCAAGCATTACATCAAAGTGGTTTGGTGAGGGTGAGAAGTATGTAAAAGCTGTTTTCTCTCTAGCCAGTAAAATTGCCCCAAGTGTTGTATTTGTTGATGAAGTTGACAGCATGCTGGGTCGAAGAGAAAATCCAGGAGAACATGAAGCCATGCGAAAGATGAAAAATGAATTTATGGTGAACTGGGATGGTTTGCGAACAAAGGACACAGAAAGGGTGCTGGTTCTTGCAGCCACAAACAGACCTTTTGATCTTGATGAAGCTGTTATTCGAAGGCTTCCTCGTAGGTTGATGGTGAATTTGCCAGATGCTCCGAACAGAGCAAAGATACTCAAAGTTATTTTGGCAAAAGAAGATTTGTCTCCAGACTTCGATTTTGATTCGGTTGCTAGTATGACAGATGGATACTCTGGGAGTGACCTTAAGAATCTTTGCGTTGCTGCTGCACACCGTCCAATTAAAGAGATATTGGAAAAGGAGAAAAAGGCAAGTTCTTTTATTATGAGTGAGCTAGAGCGTGATGCAGCTCTCGCAGATGGCAGGCCTGCTCCTGCCCTTAGTGGAAGTGAAGATATTCGGCCTCTAATTATGAACGACTTCAAATATGCTCATGAACGGGTGTGTGCAAGCGTATCATCGGAGTCCGTAAACATGACCGAGCTGCTACAATGGAACGAGCTCTACGGTGAAGGGGGCTCTAGGAGAAAGAAGGCTCTTAGTTACTTCATGTAA 3756 43.26 MVSTRRSGSLSGSNSKRSSSSEDKPSSPKRQKVENGCGSEKSMPVVENSKELCTPPTVDPGDNGPGGGPIAGVDVGEGVSSLKEDAAPAAVAVTTPIAEGTSLVGDKPRSSFSSWSLYAAKQNPNFETTTPWCRLLSQFGQNPNVDIFSSNFTIGSSRGCNFPLKDHTISGTLCKIKHTQREGSAVAVLESTGGKGSVMVNGLTVKKSSSCVLNSGDEVVFGALGNHAYIFQQLMNEVSVKGLDVQSGVGKFLQLGKRTGDPSAVAGASILASLSSLRQDISRWKPPSQTSGKTHQGAELPSNSVVHDAMELEIDALEANSNPEVRNDKAVDSSTTSRNLHPGSNPDALIEAGNVKLSGVNDLIGPLFRMLAQSTSCKLKLSKSICKQVMEERNQWIGELQPASTSGMSLRCAAFKEDVHAGIVDGRDLEVSFENFPYYLSENTKNVLIAASYIHLKHKEHSKYASELNTVNPRILLSGPAGSEIYQEMLAKALANYYGAKLLIFDSHSFLGGLSSKEAELLKDGVNAAKSCSCSKQSTVSTETTKNTDQVTGEEDTPSSSNATLTAPDSQPKMEMDSIPSSSGTAKNNFLKIGDRVKFIGSASGGIYPATSPTRGPPNGTRGKVVLTFDNSSSKIGVKFDKLIPDGVDLGGYCEGGYGYFCYATDLRLENSGVEELDKILIDILFEAVFSESRNSPFILFMKDAEKSLVGNLDSYSTFKSRLEKLPDNVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKATKLLTKLFPNKVTIHMPQDEGLLVSWKHQLERDAETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRILLSCESIQYGISILQAILNESKCMKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPDFDFDSVASMTDGYSGSDLKNLCVAAAHRPIKEILEKEKKASSFIMSELERDAALADGRPAPALSGSEDIRPLIMNDFKYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFM 1251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1743519 1756814 + Cp4.1LG20g03070.1 Cpe20g00310 486939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00310 1251 MobiDBLite consensus disorder prediction 282 301 - -
Cpe20g00310 1251 Pfam ATPase family associated with various cellular activities (AAA) 978 1107 IPR003959 GO:0005524|GO:0016887
Cpe20g00310 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 937 1167 IPR027417 -
Cpe20g00310 1251 Pfam AAA+ lid domain 1131 1167 IPR041569 -
Cpe20g00310 1251 SMART AAA_5 974 1111 IPR003593 -
Cpe20g00310 1251 SUPERFAMILY SMAD/FHA domain 131 229 IPR008984 GO:0005515
Cpe20g00310 1251 Gene3D - 936 1225 IPR027417 -
Cpe20g00310 1251 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 77 362 - -
Cpe20g00310 1251 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 388 1251 - -
Cpe20g00310 1251 Gene3D - 131 240 - -
Cpe20g00310 1251 CDD FHA 149 232 IPR000253 GO:0005515
Cpe20g00310 1251 Pfam FHA domain 153 222 IPR000253 GO:0005515
Cpe20g00310 1251 MobiDBLite consensus disorder prediction 537 583 - -
Cpe20g00310 1251 MobiDBLite consensus disorder prediction 282 302 - -
Cpe20g00310 1251 CDD AAA 976 1109 - -
Cpe20g00310 1251 Gene3D - 1110 1213 - -
Cpe20g00310 1251 MobiDBLite consensus disorder prediction 1 21 - -
Cpe20g00310 1251 MobiDBLite consensus disorder prediction 326 343 - -
Cpe20g00310 1251 MobiDBLite consensus disorder prediction 318 345 - -
Cpe20g00310 1251 MobiDBLite consensus disorder prediction 22 36 - -
Cpe20g00310 1251 MobiDBLite consensus disorder prediction 1 76 - -
Cpe20g00310 1251 ProSitePatterns AAA-protein family signature. 1081 1100 IPR003960 GO:0005524|GO:0016887
Cpe20g00310 1251 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 77 362 - -
Cpe20g00310 1251 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 388 1251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00310 - - - csv:101214766 2249.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00585 Cpe-Chr5:3545490 Cpe20g00310 Cpe-Chr20:1743519 5.03E-72 dispersed
Cpe09g00014 Cpe-Chr9:80867 Cpe20g00310 Cpe-Chr20:1743519 2.73E-89 dispersed
Cpe12g00942 Cpe-Chr12:8036414 Cpe20g00310 Cpe-Chr20:1743519 0 dispersed
Cpe13g00326 Cpe-Chr13:2911349 Cpe20g00310 Cpe-Chr20:1743519 1.51E-77 dispersed
Cpe14g00023 Cpe-Chr14:137935 Cpe20g00310 Cpe-Chr20:1743519 2.18E-90 dispersed
Cpe14g00486 Cpe-Chr14:3079211 Cpe20g00310 Cpe-Chr20:1743519 1.01E-12 dispersed
Cpe17g00793 Cpe-Chr17:6212077 Cpe20g00310 Cpe-Chr20:1743519 0 dispersed
Cpe17g00717 Cpe-Chr17:5717818 Cpe20g00310 Cpe-Chr20:1743519 3.21E-168 transposed
Cpe20g00310 Cpe-Chr20:1743519 Cpe09g00965 Cpe-Chr9:8608805 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g126 . . Bda06g00733 . Bpe12g00487 . . . Cmo13g00832 . . . . . . Cpe20g00310 . . . . . . . . . . . . . . . Cone2ag0968 . . Cone19ag0203 Lsi02g00499 Csa01g00959 . . . Blo15g00077 . . Bpe07g00884 . . . . . . Cma13g00801 . Car13g00649 Car18g00225 . . Bhi08g01473 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002923 2 8 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 4 2 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00310 Cpe_Chr20 FPKM 13.473984 15.082347 73.952591 71.553818 4.43574 4.47834 5.084265 96.387421 95.976936 90.253464