Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00318 CATCCGCGTGCTCGATCGCGCATCACTTTCTTCGAGTCCACTTCCATGGCAGATCGGAATCCCAGCTTAAACGCCGCCCATTTCGTTGATATTCGAAGCGGTTTCTGTCCTCAGACGAAGATTTTCCGTAGCCTCCGACCACCCCTCATAATTCCGCCATTATCTCAGCCTCTCTCCGTTACCGAACACGCCCTTTCTCTCCTTCAATCGTCCCCTCCTCCTTCAAATGCCGCCGTTCTCGTCGACTCCAACTCCGGTGTTCATCTCTCCTATGCCATTTTTCTCCGTCAAATACGAACCCTTGCCTCTAATCTTAAAGCGTTAACCTCACTCTCCAATGGTCAAGTGGCTTTTATTCTCGCACCGACTTCTCTGGAAGTCCCTGTGTTGTATTTTGCTCTGTTATCTCTCGGTGTTGTTATCTCTCCGGCTAATCCGATTGGTTCCGATTCGGAGATTTCTCATCAGATTCGACTCAGTCAACCGGTCATTGCCTTCGCTACATCCTCGACGGCGTCCAAGCTCCCCAAGCTTCCACTCGGCACCGTCCTGATCGATTCTCCTGCGTTTCTCTCCATGATGACCGAAATCAATAGATCTGATGGTATTGCCGACGTTAAAGTCGATCAATCCGACTCGGCGGCGATCCTGTACTCGTCAGGAACGACAGGGCGAGTGAAAGGCGTGTTACTGAGTCATCGAAACCTTATTGTGGTGAACTCTAGTCCTAATCCTCTTCTATCTGAGGTCAACAACGGAGAGACGGAGCCACGTCAGGTGTCTCTGTGTCTGTTGCCTCTGTTCCATGTTTTCGGATTCGTCATGTTGCTTCGAGCGATTTCACGAGGAGAAACATTGGTTCTGATGCAAAAATTCGACTTCGTGGAGATGCTATCAGCAGTAGAGAAGTTTGGAGTTACGTACATCCCAGTTTCTCCGCCGCTAGTGGTGGCGCTGGCCAAGTCGGAACTGGTGGCGAAATACGATCTCAGTTCTCTTCAAGTTTTGGGGTGCGGCGGCGCTCCTCTTGGGAAAGAAGTCATCGAGAAATTCCATCAGAAATTGCCCAAAGTTGAAATTATCCAGGGATATGGGTTGACAGAGAGTACAGCGGGGGCAGCAAGAAGTATGGGGCCCGAGGAAAGCAGCAACACGAAGTCAGTAGGCCGCCTATCTGAAAACATGGAAGCCATGATTGCAACTACCGAAACCCTGCATCCAGATGGATGGCTAAAGACCGGTGATCTTTGCTATTTTGATTCCGATGGATTCCTCTACATTGTTGATAGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCAGAATTGGAACATTTGCTTCAATCCAACCCTGAAATCATTGACGCTGCTGTGATACCCTATCCCGATGAAGATGCTGGAGAGATTCCTATGGCTTACGTTGTTAGAAAGCCTGGAAGCAATATCACTGAGGCTCAAGTTGCACCGTACAAGAAAATTCGACGAGTTTCGTTTATCGACGCGATCCCGAAATCGCCTGCCGGGAAGATTCTGAGGAGGGAGCTGACCCAACATGCTCGCTCTCATGGTTCTAATAAGCTCTAA 1596 49.19 HPRARSRITFFESTSMADRNPSLNAAHFVDIRSGFCPQTKIFRSLRPPLIIPPLSQPLSVTEHALSLLQSSPPPSNAAVLVDSNSGVHLSYAIFLRQIRTLASNLKALTSLSNGQVAFILAPTSLEVPVLYFALLSLGVVISPANPIGSDSEISHQIRLSQPVIAFATSSTASKLPKLPLGTVLIDSPAFLSMMTEINRSDGIADVKVDQSDSAAILYSSGTTGRVKGVLLSHRNLIVVNSSPNPLLSEVNNGETEPRQVSLCLLPLFHVFGFVMLLRAISRGETLVLMQKFDFVEMLSAVEKFGVTYIPVSPPLVVALAKSELVAKYDLSSLQVLGCGGAPLGKEVIEKFHQKLPKVEIIQGYGLTESTAGAARSMGPEESSNTKSVGRLSENMEAMIATTETLHPDGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSNPEIIDAAVIPYPDEDAGEIPMAYVVRKPGSNITEAQVAPYKKIRRVSFIDAIPKSPAGKILRRELTQHARSHGSNKL 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1796227 1799694 + Cp4.1LG20g03200.1 Cpe20g00318 486947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00318 531 Gene3D - 51 432 IPR042099 -
Cpe20g00318 531 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 49 521 - -
Cpe20g00318 531 SUPERFAMILY Acetyl-CoA synthetase-like 74 525 - -
Cpe20g00318 531 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 49 521 - -
Cpe20g00318 531 Pfam AMP-binding enzyme C-terminal domain 446 513 IPR025110 -
Cpe20g00318 531 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Cpe20g00318 531 Gene3D - 433 527 IPR045851 -
Cpe20g00318 531 Pfam AMP-binding enzyme 76 405 IPR000873 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00974 Cpe20g00318 CCT
Cpe09g00974 Cpe20g00318 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00892 Cpe-Chr19:6511803 Cpe20g00318 Cpe-Chr20:1796227 4.34E-24 dispersed
Cpe02g01315 Cpe-Chr2:11679436 Cpe20g00318 Cpe-Chr20:1796227 2.86E-100 transposed
Cpe03g00196 Cpe-Chr3:982403 Cpe20g00318 Cpe-Chr20:1796227 2.38E-09 transposed
Cpe06g00035 Cpe-Chr6:175728 Cpe20g00318 Cpe-Chr20:1796227 4.61E-26 transposed
Cpe09g00598 Cpe-Chr9:4145298 Cpe20g00318 Cpe-Chr20:1796227 8.98E-06 transposed
Cpe15g00179 Cpe-Chr15:1464272 Cpe20g00318 Cpe-Chr20:1796227 1.01E-89 transposed
Cpe20g00318 Cpe-Chr20:1796227 Cpe09g00974 Cpe-Chr9:8675363 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00318 K01904 - csv:101213796 791.956