Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00332 ATGATGGTGGCTTTAACATCCTGCACTGCCATCTTCATTCTATTGTGTGGTTTTGTTTTGGCTTCTCCGACTGCAACCGAGACGCATCCACGTCTCTTCAATAAGATCTACGCCTTTGGCGACTCTTTCACAGACACTGGCAATACAAGGTCGGTATCAGGGCCAGCCGGATTTGGCCATGTCTCTAATTCTCCTTATGGTAGTACCTTCTTTCACCACTCGACCAACCGATATTCGGATGGACGACTGGTGATCGACTTTGTAGCTCAGTCACTGTCCTTACCTTTCTTGCCGCCTTACAAATATTTGAAGGGAAATGACTCGTTTCATGGGGTGAACTTTGCTGTTGCTGGCTCCACAGCTATAAACCATGGTTTCTTTGTCAGAAACAACCTTAGCCTTGACATTACTCCGCAGTCTATCCAAACTCAGCTCCTTTGGTTCAACAAGTTCTTGGAAACTCAAGGATGTAGAGGGGCAGAGACAAAGACACAGTGCAAAGCTGCATTTGATGATGCTTTGTTCTGGGTTGGTGAAATTGGAGTCAATGATTATGCTTATGCCGTTGGATCTTCTATCACTGATGATACCATTCGGAAGCTCGGTGTCGCCAGCGTCACTGGAGTTTTACAGTCTCTGCTGAAGAAGGGTGCAAAGTACGTGGTTGTTCAAGGTTTACCACCAAGTGGATGTCTGGCATTAGCAATGTCTCTAGCTCCCGTCACCGACAGAGACGATATCGGCTGCGTGAAGAGCCTAAACAACCAAACCTACGTTCACAATATTGCTCTCCAAGCTTCATTGCAATCTTTAAGAGAGCAGTTTCCTCAAGCTGTCATCATATATGCCGATTACTGGAACGCCTATCGTATGGTTATGAAGAATCCCAGCAAGTACGGTTTCAGGGAGCGTTTCAAAGCCTGCTGCGGTGTCGGTGAGCCCTACAACTTCGACATGTTTACTGTCTGTGGAATGCCTTCTGTCAGTTCCTGCAAAAGCCCACCTGAATACATCAACTGGGATGGAGTTCATCTCACGGAAGCCATGTATAAAGCAGTTCATGACATGTTCATTAAAGGTGGACTTACCCATCCAGCTTTGAGTAACCTGTTGGACATGAAACATCACTAG 1131 46.24 MMVALTSCTAIFILLCGFVLASPTATETHPRLFNKIYAFGDSFTDTGNTRSVSGPAGFGHVSNSPYGSTFFHHSTNRYSDGRLVIDFVAQSLSLPFLPPYKYLKGNDSFHGVNFAVAGSTAINHGFFVRNNLSLDITPQSIQTQLLWFNKFLETQGCRGAETKTQCKAAFDDALFWVGEIGVNDYAYAVGSSITDDTIRKLGVASVTGVLQSLLKKGAKYVVVQGLPPSGCLALAMSLAPVTDRDDIGCVKSLNNQTYVHNIALQASLQSLREQFPQAVIIYADYWNAYRMVMKNPSKYGFRERFKACCGVGEPYNFDMFTVCGMPSVSSCKSPPEYINWDGVHLTEAMYKAVHDMFIKGGLTHPALSNLLDMKHH 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1864285 1868715 - Cp4.1LG20g03220.1 Cpe20g00332 486961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00332 376 CDD SGNH_plant_lipase_like 36 360 IPR035669 -
Cpe20g00332 376 Gene3D SGNH hydrolase 24 360 IPR036514 -
Cpe20g00332 376 SUPERFAMILY SGNH hydrolase 35 358 - -
Cpe20g00332 376 PANTHER LIPASE/HYDROLASE FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 5 375 - -
Cpe20g00332 376 Pfam GDSL-like Lipase/Acylhydrolase 36 355 IPR001087 GO:0016788
Cpe20g00332 376 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 5 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00332 - - - csv:101211626 683.715
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00986 Cpe20g00332 CCT
Cpe09g00986 Cpe20g00332 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00890 Cpe-Chr15:8575466 Cpe20g00332 Cpe-Chr20:1864285 4.74E-42 dispersed
Cpe19g01058 Cpe-Chr19:7268287 Cpe20g00332 Cpe-Chr20:1864285 3.88E-58 dispersed
Cpe20g00332 Cpe-Chr20:1864285 Cpe03g00816 Cpe-Chr3:5084934 7.00E-47 dispersed
Cpe20g00332 Cpe-Chr20:1864285 Cpe09g00986 Cpe-Chr9:8732661 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g899 . . . . . . . . Cmo13g00810 Cmo18g00188 . . . . . Cpe20g00332 . . . . . . . . . . . . . . . Cone2ag0952 Cone16ag0048 . . . Csa01g00925 . Cme12g01625 . . . . . . . . Sed08g2463 . . Cma13g00778 Cma18g00212 . Car18g00204 Cpe09g00986 . Bhi08g01699 Tan05g2902 Cmetu12g0903 Lac10g0540 Hepe07g2160 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009369 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00332 Cpe_Chr20 FPKM 61.981705 68.87178 59.368793 60.94838 52.93309 58.197937 52.854191 59.726288 55.010544 57.667927