Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00333 ATGGAACCTTCTGAAGCCGTTTCAGTCCCTAATCACTGTGAAGAATCGGCTTCTGAGTTTCAATCTTCTTCGCAGTTTCGTAGTTCTGTTCTTGATCCTGTGGCTACTGATGATCGCATCCATGCAGAGCTTCAGGAATTGGATTTGAAGGATGAGAAAGAGGAGACCGTGAAGGATTTTGATGACGGTGGAGAATGGGAAGTTGAGAAGAATCCCGATGAAGGTGAAGGAAATGATGCGAAGAAGATCGGTGAGAGTGATCGAGATAGAAGCGTTAGGAATGACGACGGCGATGACGATGACGATGAGGAGGTTGATGCAGCCGACGGCGACGGCGGTGAGGTGGAGAATATAGGGGATTGGAGAGGCAAAAACAACCAGTATCCAGTACGACCGGAGGCGGAGGATTGTGCCTTTTACCTCAAAACTGGGACCTGCAAGTTCGGATCATTTTGCAAATTCAATCACCCTCTGCGAAAGAAAAACCAGGTTGTTTCTGAGAAATTAAAGTACGAAGACGATTCGGCTAGGCTGGCGGGCAAGACGGAATGCAAGTTTTACTTGAGGACGGGGGGTTGTAAATTCGGGGACGCTTGTAGATATAACCACACGAGACCAAAAGCGTTGGCAAGCTCAATTCTAGAGCTTAACTTCCTTGGTCTGCCAATCCGACCAGATGAAAAAGAATGTCCCTTTTACATGCGCACCGGGTCCTGCAAATACGGAGCTAACTGCAAGTTTAACCATCCTGATCCCACAACTGTTGCTGTACCCGAATCTCCATCAGGATATAACAATGGAGTGCCCCTACAAGGTGGATCACAATCACATATCCCATCCTGGAATTCACCAAGAGTACTGAATGAAGCTACAGCATTTGTACCTGCTGTGATTTCACCATCTCCAGATTCAGAATGGAACGGTTACCAGGCTCCCGTATATCCATCAGAAATCAGCGTGCTTCCACCTCCGACATACGTCGTGAACAATATAGCATCTGAGACGGATATCTATCCTTGTCATCAGCAGGCGGAAGAGTATCCCGAACGACCTGGTCAACCCGAATGCAGCTACTTTCTAAAGACGGGGGACTGTAAATTTAAAACTCTTTGCAAATATCACCATCCAAAGAATCGGAACCCGAAGTTACCGGCTTGCACTCTCAATGATAAAGGCCTGCCTTTGAGACCTGATCAGAACATATGCACATATTATAGTCGTTACGGCATCTGCAAGTTCGGGCCATCTTGCAAGTTCGACCATCCTATGCTTCCAGCTTCTTCAACCGTGGGCGTGGGCGTGGGCGAGCTTGAGCAGCAACCTCGCTACGGTAACTTCAGTGCTGCAGAAGGGGCTGAAATGGCTGGGGGAGGGAGCAGAAACAGCCCCACAGTTGAGCAGTCTGCATAA 1410 48.3 MEPSEAVSVPNHCEESASEFQSSSQFRSSVLDPVATDDRIHAELQELDLKDEKEETVKDFDDGGEWEVEKNPDEGEGNDAKKIGESDRDRSVRNDDGDDDDDEEVDAADGDGGEVENIGDWRGKNNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPLRKKNQVVSEKLKYEDDSARLAGKTECKFYLRTGGCKFGDACRYNHTRPKALASSILELNFLGLPIRPDEKECPFYMRTGSCKYGANCKFNHPDPTTVAVPESPSGYNNGVPLQGGSQSHIPSWNSPRVLNEATAFVPAVISPSPDSEWNGYQAPVYPSEISVLPPPTYVVNNIASETDIYPCHQQAEEYPERPGQPECSYFLKTGDCKFKTLCKYHHPKNRNPKLPACTLNDKGLPLRPDQNICTYYSRYGICKFGPSCKFDHPMLPASSTVGVGVGELEQQPRYGNFSAAEGAEMAGGGSRNSPTVEQSA 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1869479 1873279 - Cp4.1LG20g03260.1 Cpe20g00333 486962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00333 469 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Cpe20g00333 469 SUPERFAMILY CCCH zinc finger 394 422 IPR036855 GO:0046872
Cpe20g00333 469 MobiDBLite consensus disorder prediction 14 31 - -
Cpe20g00333 469 SUPERFAMILY CCCH zinc finger 131 160 IPR036855 GO:0046872
Cpe20g00333 469 PANTHER PROTEIN PHOSPHATASE RELATED 31 468 - -
Cpe20g00333 469 Gene3D - 120 173 - -
Cpe20g00333 469 Gene3D - 324 383 - -
Cpe20g00333 469 SMART c3hfinal6 226 251 IPR000571 GO:0046872
Cpe20g00333 469 SMART c3hfinal6 131 158 IPR000571 GO:0046872
Cpe20g00333 469 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Cpe20g00333 469 SMART c3hfinal6 396 423 IPR000571 GO:0046872
Cpe20g00333 469 SMART c3hfinal6 179 205 IPR000571 GO:0046872
Cpe20g00333 469 MobiDBLite consensus disorder prediction 44 127 - -
Cpe20g00333 469 MobiDBLite consensus disorder prediction 44 95 - -
Cpe20g00333 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 182 203 IPR000571 GO:0046872
Cpe20g00333 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 226 250 IPR000571 GO:0046872
Cpe20g00333 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 377 IPR000571 GO:0046872
Cpe20g00333 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 157 IPR000571 GO:0046872
Cpe20g00333 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 399 423 IPR000571 GO:0046872
Cpe20g00333 469 SUPERFAMILY CCCH zinc finger 225 252 IPR036855 GO:0046872
Cpe20g00333 469 MobiDBLite consensus disorder prediction 96 113 - -
Cpe20g00333 469 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 31 468 - -
Cpe20g00333 469 MobiDBLite consensus disorder prediction 1 31 - -
Cpe20g00333 469 Gene3D - 177 260 - -
Cpe20g00333 469 Gene3D - 396 449 - -
Cpe20g00333 469 ProSiteProfiles Zinc finger C3H1-type profile. 178 206 IPR000571 GO:0046872
Cpe20g00333 469 ProSiteProfiles Zinc finger C3H1-type profile. 396 424 IPR000571 GO:0046872
Cpe20g00333 469 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Cpe20g00333 469 MobiDBLite consensus disorder prediction 443 469 - -
Cpe20g00333 469 ProSiteProfiles Zinc finger C3H1-type profile. 131 159 IPR000571 GO:0046872
Cpe20g00333 469 SUPERFAMILY CCCH zinc finger 182 206 IPR036855 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00333 - - - cmo:103484086 773.081
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00988 Cpe20g00333 CCT
Cpe09g00988 Cpe20g00333 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01531 Cpe-Chr5:10541426 Cpe20g00333 Cpe-Chr20:1869479 1.29E-13 dispersed
Cpe16g00747 Cpe-Chr16:7509290 Cpe20g00333 Cpe-Chr20:1869479 1.95E-13 dispersed
Cpe18g00257 Cpe-Chr18:4223686 Cpe20g00333 Cpe-Chr20:1869479 1.94E-07 dispersed
Cpe20g00333 Cpe-Chr20:1869479 Cpe09g00988 Cpe-Chr9:8741032 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51117 PF00642 zf-CCCH 3.70E-09 CL0537 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00333 Cpe_Chr20 FPKM 5.35784 6.295418 2.329099 2.928352 5.52566 6.88799 6.510958 3.607847 3.574356 3.66854