Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00334 ATGGCAGCCACGGCTCTGGCGGCGGAGCCGCCGCAAGAGGTATTTTCCTGGCTCAAAACCCTACCTCTGGCTCCTGAATACCACCCGACTTTGGCAGAGTTTCAAGATCCAATTTCATACATTTTCAAGATCGAAAAAGAGGCTTCCAAGTTTGGTATCTGCAAAATTGTGCCCCCTGTATCTCCATCACCGAAGAAAACTGTAATTGTCAATTTCAATAGGTCGCTTGCAGCTCGTGCCCCCTGTTCTGACACGAGCGATTCCAAGTCTCCGCCTACATTCACTACTCGACAACAACAGATCGGGTTTTGCCCGCGTAAAACTCGGCCGGTTCAGAAATCAGTGTGGCAGAGCGGCGAGTACTACACATTTCAGCAATTTGAAGCTAAGGCGAAGAGCTTTGAGAAGAGCTATTTGAAGAAATGTGCGAAGAAAGGGGGGCTTTCGCCTTTAGAAATCGAGACGCTCTATTGGAGAGCCACTTTGGACAAGCCGTTTTCAGTGGAATATGCGAACGACATGCCTGGTTCTGCTTTTGTGCCGGTAAATGCAAAAATGCTTCGGGAGGCAGGGGAAGGAACAACGCTTGGGGAGACGGCATGGAACATGAGGGGGGTGTCTAGGGCGAAGGGGTCTCTATTGAAGTTTATGAAGGAAGAGATTCCAGGAGTTACTTCGCCAATGGTGTACGTAGCTATGATGTTTAGCTGGTTCGCTTGGCATGTAGAAGACCATGACTTGCATAGCTTAAATTATCTGCATATGGGGGCGGGAAAGACATGGTATGGCGTACCTAGAGATGCTGCTGTGGCGTTTGAGGAGGTTGTAAGGGTTCAGGGATACGGAGGAGAAATCAATCCCCTTGTCACTTTTGCTGTTCTTGGTGAGAAGATCACTGTGATGTCACCTGAAGTTCTAGTTAGCGCTGGAGTTCCATGTTGCAGGTTAGTGCAAAATGCTGGTGAATTTGTTGTCACTTTTCCTCGGGCTTATCATACAGGTTTCAGTCATGGGTTTAACTGTGGGGAGGCAGCCAATATTGCAACTCCAGAATGGGTAAGGCTTGCTAAAGATGCTGCAATTCGTAGAGCTTCGATCAATTATCCTCCGATGGTCTCTCATTTTCAGTTGCTATACGATCTTGCTTTAAGTTCCAGATCACCTCTGTGCACGGGTGCTGAACCAAGAAGTTCACGACTAAAAAATAAAAGAAAGAGTGAAGGGGAAGCAGTTATAAAAGAGTTATTTGTACAGAATATTATAGAAAATAACAGCCTGCTGGACATTCTTGGAAGAGGAGCGTCGGTTGTACTTCTTCCCCCAGGTTCTTCAGATTCTATTTATTCGAGACTGCGCATTGGATCCCACCTGAGAGCAAAATCTAGATTTCCTGTTGGTTTTTGCAGTTCTAAGGAAGAAACCAAATCTTCTCAAAGTTTTGATTATGATAATCTCACACTAGAAAATAGCCAGGGAATGAATCAAGTTAAAGGTTTCTATTCAGCTAACAGGCTGTATTCTACTCTCTCTGAAAGAAACACGGAGAATTTATGTGATTCAAGGTCGAAGACTTCGAATGGCAGCAACGAACAAGGTGGTAATGTTCTTAGTGATGGATTATCAGATCAAAGGCTGTTTTCTTGTGTCACATGTGGCATTTTAAGCTTTGCCTGTGTAGCCATCGTCCAACCGAGAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTTAATGATTGGGCTGTTGGTTCTGGGATTGCTATTAGAGATGGGCATGCAGTTAGCTCTCAGCAGATTAGTAATAGTGGAAAAAGAGATACGTGTGTTTCTGATGGTTTGTACGACGTCCCAGTCCAGGCTGTCAATCGCCAGCTTCCAATTGCAGATGAAAGTTACAAAGCTAATCTAAGTACTGAAAAACGGAATGAGACTTCTGCCCTTGGCATGCTCGCATTGGCATATGGACTTTCTTCCGATTCTGAGGAGGACAATGCTGAAGCAGATGCTGCTTTAAATCCCGGCGATGCTAAACTAACGGTTTGTTCTTCAGGAAACCAATATCAGTATGACAATTCTGGTCTTACTTCTAGTGAAAATTGCAAAAATACTGCAACTTTGGATCACAATGCCTCGTCATTTGGCGTTAATGCTACAGATCAAATGCACTTCCAAATTAATGACTATGAAGAATTTGGACAAGCTAGATGTTCTTCAGAGTCTGAAATGGATGGCATAGGTTCAACTAAGAAAAATGGCTTGTCGCCTAGATATCAAGATTTGCATGTGAACGACAGATCTTCCTTAGACGCTGATACTGAAAAACCAACGTTTGGCGAATCCACGGAACCGGTGGAGATTGAGAATATGCCATTTGCTCCAGATATTGATGAAGACTCCTCTAGGTTGCATGTATTCTGCCTAGAGCACGCAAAAGAAGTGGAACAACAACTTCGACCAATTGGAGGAGCGCACATTCTTTTACTCTGTCATCCAGACTACCCGAAGATGGAGGCAGAAGCAAAATTGGTGGCACAAGAATTAAGTGTGGACCATGTGTGGACCGATACGACGTTCAGAGGTGCCACCGAAGATGAAGAAAGGAGAATTCAGTTAGCTTTAGATAGTGAGGAAGCCATTCCAGGTAATGGAGATTGGGCTGTAAAGTTGGGAATAAATCTGTTTTACAGTGCCAACCTTAGTCACTCTCCTCTTTATAGTAAGCAGATGCCATACAATTCTGTTATTTATAATGCATTTGGCCGTAGTGCTACTCCCAACGCTTCTGGTAAGCCGAAAGTCTATCAAAGAAGGACTGCTGGCAAGTTGAAACGAATAGTTGCAGGGAAATGGTGTGGGAAAGTCTGGATGTCGAATCAAGTTCATTCTTTGCTAGCAAAGCGAGATCCTCAACAAGAAGATGTAGACGTCTTCCATTCTTGGACAATGCCGGATGAGAAGTTTGACAGGAAATCGGAAAATGTCCGTAAAACTGAGACTGTTATGGTGAATAGAAAATCCGCTGGCAAGAGAAAAATGACTCGTGGGAGCGGAACAGCTAAAAAAGTGAAACCTCGAGAGTCAGAGGACATGGTTTCAGATGATTCAGTCGAAGATTGTGTCGATCAGCATCATAAGATTCATCGGAACAAGCGATACAAATTTGTTGAGATCAATGATGCTATGTCGGATGATTCTGTTGAGGATGATTCTTGTGGAAAACATGGAGGAGTTTCCATTAGCAAGGGAGTGACATATTGTCGAACGTATGACACCGGTTCAGAGGACTCTCTCAGAGATCGTCGTAATCAGCAGCACAGAGGGTTCTCTGGATTCAAGCTGCCGAAATGGGGTGAGATAGAACCCGCAGTTTCTGATGATTCCTTAGAGCACGATTCTTCTCGGCATCGTGAGCAACATATAAGGATTCCAAGAAGCAAGCAAACCAATGTTCTTAAGAAGAACGTCGTTTCACATGATATACGGGACGATAGTTTTCTTTGGCATCATCAAAGGACTTCCAGAAGCAAGAAGGCGAAATCAATCGAGAGTGAAGATGTCGTTTCAGAGGACTCCGTTGAAAATGATTCTCATCAGAATAGAAGTAGACCTCAACGGAAACCAGCCAAACCCACGGCGAGGGAAGACGTATTCTCAGACTATCCAGACGATCCAGACGAAGATGATAATCCTCTTCTGCAGCATAGAAGAAACATGCAATTCAATACATCAGATAACCAACTTGATGATAGTATTAATCAATACCGGAGGAGAGTACTCCGAAGTAAGCCAGTCAAGGCCGAGACAATTTCTCAAATGAAACAAGAGATCCTGCGATCTGCGAAGCGAGGAGCCTCGCAGACTTTGAAAGAAGAATTTGCTCAATCCTTAAAATGTGGAGGCCGCCATACCTCAAACTTAGAGACCCCTCAGCCAAGAATACAACATGCCACTAATCGGCACGGTAAGCAAGCTAAGAGGACTTGTAAATCGACCGATTTGGAATCAGAAAACGAGCAACCAGGTGGACCTAGCACACGTCTTCGAAAAAGAACTCTAAAGCCTACTAAACTTTCAGAAACGAAACTGAAAGATAAAAAACCAATTAGCAAGAAAAAGGTGAAGAATAGTTCATCTTTGAAGACTCCAGCAGGCCGTAGAGATTCAAAAGCAGCAGGGGATGAGGAATCAGAATATCTTTGCGACATCGAGGGTTGCAATATGAGTTTCGGTTCAAAACAAGAACTCGTCGTGCACAAACGAAATGTTTGTCCTGTCAAAGGGTGTGGGAAGAAGTTCTTCTCACACAAGTACCTCGTGCAGCATCGTCGAGTCCACATGGACGACCGTCCCCTTAAATGTCCATGGAAGGGCTGCAAGATGACATTCAAATGGGCATGGGCACGAACAGAACATATTCGTGTTCATACAGGTGCCCGACCTTACGTTTGCGCTGAACCAGGATGTGGTCAGACATTCAGATTCGTTTCGGATTTCAGTCGTCACAAGCGGAAGACTGGACATTCAACAAAGAAAGGTAGATGA 4551 44.34 MAATALAAEPPQEVFSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKFGICKIVPPVSPSPKKTVIVNFNRSLAARAPCSDTSDSKSPPTFTTRQQQIGFCPRKTRPVQKSVWQSGEYYTFQQFEAKAKSFEKSYLKKCAKKGGLSPLEIETLYWRATLDKPFSVEYANDMPGSAFVPVNAKMLREAGEGTTLGETAWNMRGVSRAKGSLLKFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLVTFAVLGEKITVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWVRLAKDAAIRRASINYPPMVSHFQLLYDLALSSRSPLCTGAEPRSSRLKNKRKSEGEAVIKELFVQNIIENNSLLDILGRGASVVLLPPGSSDSIYSRLRIGSHLRAKSRFPVGFCSSKEETKSSQSFDYDNLTLENSQGMNQVKGFYSANRLYSTLSERNTENLCDSRSKTSNGSNEQGGNVLSDGLSDQRLFSCVTCGILSFACVAIVQPREQAARYLMSADCSFFNDWAVGSGIAIRDGHAVSSQQISNSGKRDTCVSDGLYDVPVQAVNRQLPIADESYKANLSTEKRNETSALGMLALAYGLSSDSEEDNAEADAALNPGDAKLTVCSSGNQYQYDNSGLTSSENCKNTATLDHNASSFGVNATDQMHFQINDYEEFGQARCSSESEMDGIGSTKKNGLSPRYQDLHVNDRSSLDADTEKPTFGESTEPVEIENMPFAPDIDEDSSRLHVFCLEHAKEVEQQLRPIGGAHILLLCHPDYPKMEAEAKLVAQELSVDHVWTDTTFRGATEDEERRIQLALDSEEAIPGNGDWAVKLGINLFYSANLSHSPLYSKQMPYNSVIYNAFGRSATPNASGKPKVYQRRTAGKLKRIVAGKWCGKVWMSNQVHSLLAKRDPQQEDVDVFHSWTMPDEKFDRKSENVRKTETVMVNRKSAGKRKMTRGSGTAKKVKPRESEDMVSDDSVEDCVDQHHKIHRNKRYKFVEINDAMSDDSVEDDSCGKHGGVSISKGVTYCRTYDTGSEDSLRDRRNQQHRGFSGFKLPKWGEIEPAVSDDSLEHDSSRHREQHIRIPRSKQTNVLKKNVVSHDIRDDSFLWHHQRTSRSKKAKSIESEDVVSEDSVENDSHQNRSRPQRKPAKPTAREDVFSDYPDDPDEDDNPLLQHRRNMQFNTSDNQLDDSINQYRRRVLRSKPVKAETISQMKQEILRSAKRGASQTLKEEFAQSLKCGGRHTSNLETPQPRIQHATNRHGKQAKRTCKSTDLESENEQPGGPSTRLRKRTLKPTKLSETKLKDKKPISKKKVKNSSSLKTPAGRRDSKAAGDEESEYLCDIEGCNMSFGSKQELVVHKRNVCPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKGR 1516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1874271 1881881 - Cp4.1LG20g03240.1 Cpe20g00334 486963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00334 1516 PANTHER LYSINE-SPECIFIC DEMETHYLASE 4 1507 - -
Cpe20g00334 1516 ProSiteProfiles JmjC domain profile. 198 364 IPR003347 -
Cpe20g00334 1516 ProSiteProfiles Zinc finger C2H2 type domain profile. 1424 1453 IPR013087 -
Cpe20g00334 1516 Gene3D Cupin 17 368 - -
Cpe20g00334 1516 SUPERFAMILY beta-beta-alpha zinc fingers 1440 1482 IPR036236 -
Cpe20g00334 1516 MobiDBLite consensus disorder prediction 1173 1234 - -
Cpe20g00334 1516 SMART cupin_9 195 364 IPR003347 -
Cpe20g00334 1516 ProSitePatterns Zinc finger C2H2 type domain signature. 1486 1510 IPR013087 -
Cpe20g00334 1516 Pfam JmjC domain, hydroxylase 228 346 IPR003347 -
Cpe20g00334 1516 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 4 1507 - -
Cpe20g00334 1516 MobiDBLite consensus disorder prediction 1283 1393 - -
Cpe20g00334 1516 MobiDBLite consensus disorder prediction 1127 1155 - -
Cpe20g00334 1516 ProSiteProfiles Zinc finger C2H2 type domain profile. 1454 1483 IPR013087 -
Cpe20g00334 1516 SMART c2h2final6 1484 1510 IPR013087 -
Cpe20g00334 1516 SMART c2h2final6 1454 1478 IPR013087 -
Cpe20g00334 1516 SMART c2h2final6 1424 1448 IPR013087 -
Cpe20g00334 1516 SMART c2h2final6 1401 1423 IPR013087 -
Cpe20g00334 1516 ProSitePatterns Zinc finger C2H2 type domain signature. 1426 1448 IPR013087 -
Cpe20g00334 1516 MobiDBLite consensus disorder prediction 1127 1141 - -
Cpe20g00334 1516 SUPERFAMILY Clavaminate synthase-like 209 378 - -
Cpe20g00334 1516 MobiDBLite consensus disorder prediction 1173 1221 - -
Cpe20g00334 1516 MobiDBLite consensus disorder prediction 1009 1039 - -
Cpe20g00334 1516 MobiDBLite consensus disorder prediction 1095 1109 - -
Cpe20g00334 1516 ProSiteProfiles Zinc finger C2H2 type domain profile. 1484 1515 IPR013087 -
Cpe20g00334 1516 SUPERFAMILY beta-beta-alpha zinc fingers 1472 1506 IPR036236 -
Cpe20g00334 1516 MobiDBLite consensus disorder prediction 1095 1114 - -
Cpe20g00334 1516 SMART JmjN_1 23 64 IPR003349 -
Cpe20g00334 1516 Gene3D Classic Zinc Finger 1422 1508 - -
Cpe20g00334 1516 ProSiteProfiles JmjN domain profile. 24 65 IPR003349 -
Cpe20g00334 1516 ProSitePatterns Zinc finger C2H2 type domain signature. 1456 1478 IPR013087 -
Cpe20g00334 1516 Pfam jmjN domain 25 58 IPR003349 -
Cpe20g00334 1516 MobiDBLite consensus disorder prediction 1291 1320 - -
Cpe20g00334 1516 MobiDBLite consensus disorder prediction 1022 1039 - -
Cpe20g00334 1516 MobiDBLite consensus disorder prediction 1355 1369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00334 - - - csv:101210063 2489.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00989 Cpe20g00334 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01634 Cpe-Chr1:9994593 Cpe20g00334 Cpe-Chr20:1874271 3.51E-12 dispersed
Cpe01g02231 Cpe-Chr1:18974319 Cpe20g00334 Cpe-Chr20:1874271 1.40E-11 dispersed
Cpe09g00609 Cpe-Chr9:4244947 Cpe20g00334 Cpe-Chr20:1874271 1.70E-12 dispersed
Cpe14g00981 Cpe-Chr14:8287107 Cpe20g00334 Cpe-Chr20:1874271 7.99E-78 dispersed
Cpe16g00179 Cpe-Chr16:3994798 Cpe20g00334 Cpe-Chr20:1874271 6.67E-61 dispersed
Cpe20g00334 Cpe-Chr20:1874271 Cpe20g00587 Cpe-Chr20:3572938 5.36E-53 dispersed
Cpe20g00334 Cpe-Chr20:1874271 Cpe09g00989 Cpe-Chr9:8747642 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51118 PF02373 JmjC 2.30E-36 CL0029 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00334 Cpe_Chr20 FPKM 6.770026 7.131126 8.564022 8.32507 10.000345 8.116908 9.330887 9.406094 8.5178 10.088176