Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00336 ATGCCTCTCAAGACAGAACATGGAGCATCGGACAGCTCCCTCGACGAGCACTCGAAGGCGGCCCATTCTTCTAAAGTCGTTGTTCTTGCTGACCTCAATGTTGATCCTCCAGAAATGGACGACGACAGTTCCGTTCACGTTTCAGCTTCGACTATCTCTAGGTTATCTGTGGATGAGAGCAATCAAGACAAAACTGTGGCAATTTGCAAGGATACTAATACAATGGAAGTTGAAGGTAGACATGTAAGCAAAATAGGGAAGTGCCGTTCAAGAAACAATAAGGTAGAGTACTCTCTTGATTCTGCAGCTGATGCAGATGGTGATCAACATGGTCAAGGTGTTTCAACTTCACGCGAAGAAAAAGTCAGCAGCCTCAAAACTGGGTTAGTTCATGTAGCAAGAAAGATGCCAAAAAATGCTCACGCTCATTTCATTCTTGGCCTAATGTATCAGAGGTTGGGCCAGCCACAAAAGGCTGTTTCAGCATATGAGAAGGCAGAGGAAATCTTACTCCAAAGTGATGTTGAGATTCACAGGCCAGAGTTGCTCTCATTGGTCCAAACTCATCATGCACAGTGTCTCCTTCTAGAAAGTGCAGCAGGGGATAATAGTTCAGACAAAGAACTTGATCAAGAGGAGCTTGACGAGATTCTTTCTAAACTTAAGCATTCAATTCAATCTGATGTTAGACAGGCAGCTATGTGGAATACCCTAGGCTTGATACTTCTTTCTACTGGTCGAGTGAAGAGTGCCCTTTCAGTGTTATCATCCCTGTTGGCCATTGTCCCTAACAACTATGATTGCCTTGGAAACCTTGGAATTGCTTATCTTCAAAGTGGAAACATGGAACTATCAGAAAAATGTTTTCAAGAATTGATCCTGAAAGATCAAAATCATCCTGCTGCTCTCATCAACTATGCTGCTTTTCTCTTGTGCAAGTATGGTTCTACTGTTGTAGGTGCTGGAGCAAATGCTGGTGAAGGTGGTGTTGATGAGAAGGTTGTAGGTATGAATGTTGCAAAGGAATGTTTGCTAGCGACTCTAAAGGTAGATCCAAAAGCAGCACATGCCTGGGCAAATCTTGCTAATGTGTATTTTGTGACTGGGGACCACAGAAGTTCTGCCAAGTGCTTGGAGAAGGTAGCAAAACTGGAGCCAAATTGCATGGCTATGAGATATTCTGTTGCTATGCACCGGCTTAAGGATGCAGAAAGGTCTCAAGATCGTAGTGAGCAGCTCTCCTGGGCTGGAAATGAAATGGCCTCAATTATTAGAGATGGAGATGGCTTGACAATCGATCATCCTGTAGCATGGGCTGGGCTTTCCATGGTTCACAAGGCTCAGCATGAGATTGCTTCTGGATTTCGTACAGATCAAAGTGAACTGAGAGAAGTGGAAGAACACGCCGTCTACAGTTTATATCAGGGAATAGCTGAGGACCCAGATGATGCTGTTCAGTGGCATCAATTCGGCCTCCACAGTCTCTGTACACGAGAATTTAAAACATCACAAAGATACCTCAAAGCTGCAATTGCTCGCTTTAAGAACTGTAGCTATGCATGGTCAAACCTAGGTATCTCGTTGCAACTCTCAGACAACCCGACACAGGCCGAAGAAGTATACAAGAAAGCTTTGTCATTGGTGGCCACAGAACAAGCACATTCCGTATTTTGCAACCTCGGAAATCTGTATCGACAGCAAAAACAGTATGAACGTGCCAAAGCTATGTTCTCAAAGTCTCTGGAACTGCAACCTGGTTATGCTCCTGCATTTAACAATCTAGGATTAGTGTTTATTGCAGAGGGTCGATGGGAGGAGGCTAAGTATTGTTTTGAGAAAGCTCTTGAGGCTGATCCATTGCTCGATTCAGCTAAGTCGAATTTGATTAAAACAGTAGCGGTATCTCGATTATGTAATAGCTTATCATCGTGTCGTGTTAAAGATTGA 1947 43.71 MPLKTEHGASDSSLDEHSKAAHSSKVVVLADLNVDPPEMDDDSSVHVSASTISRLSVDESNQDKTVAICKDTNTMEVEGRHVSKIGKCRSRNNKVEYSLDSAADADGDQHGQGVSTSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVSAYEKAEEILLQSDVEIHRPELLSLVQTHHAQCLLLESAAGDNSSDKELDQEELDEILSKLKHSIQSDVRQAAMWNTLGLILLSTGRVKSALSVLSSLLAIVPNNYDCLGNLGIAYLQSGNMELSEKCFQELILKDQNHPAALINYAAFLLCKYGSTVVGAGANAGEGGVDEKVVGMNVAKECLLATLKVDPKAAHAWANLANVYFVTGDHRSSAKCLEKVAKLEPNCMAMRYSVAMHRLKDAERSQDRSEQLSWAGNEMASIIRDGDGLTIDHPVAWAGLSMVHKAQHEIASGFRTDQSELREVEEHAVYSLYQGIAEDPDDAVQWHQFGLHSLCTREFKTSQRYLKAAIARFKNCSYAWSNLGISLQLSDNPTQAEEVYKKALSLVATEQAHSVFCNLGNLYRQQKQYERAKAMFSKSLELQPGYAPAFNNLGLVFIAEGRWEEAKYCFEKALEADPLLDSAKSNLIKTVAVSRLCNSLSSCRVKD 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1890307 1897915 - Cp4.1LG20g03450.1 Cpe20g00336 486965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00336 648 ProSiteProfiles TPR repeat region circular profile. 588 619 - -
Cpe20g00336 648 SUPERFAMILY TPR-like 137 391 IPR011990 GO:0005515
Cpe20g00336 648 Pfam Tetratricopeptide repeat 355 388 IPR019734 GO:0005515
Cpe20g00336 648 Pfam Tetratricopeptide repeat 140 169 IPR019734 GO:0005515
Cpe20g00336 648 Pfam Tetratricopeptide repeat 242 301 - -
Cpe20g00336 648 ProSiteProfiles TPR repeat profile. 232 265 IPR019734 GO:0005515
Cpe20g00336 648 SMART tpr_5 140 173 IPR019734 GO:0005515
Cpe20g00336 648 SMART tpr_5 266 299 IPR019734 GO:0005515
Cpe20g00336 648 SMART tpr_5 518 551 IPR019734 GO:0005515
Cpe20g00336 648 SMART tpr_5 232 265 IPR019734 GO:0005515
Cpe20g00336 648 SMART tpr_5 554 587 IPR019734 GO:0005515
Cpe20g00336 648 SMART tpr_5 355 388 IPR019734 GO:0005515
Cpe20g00336 648 SMART tpr_5 588 621 IPR019734 GO:0005515
Cpe20g00336 648 ProSiteProfiles TPR repeat region circular profile. 554 585 - -
Cpe20g00336 648 ProSitePatterns EF-hand calcium-binding domain. 202 214 IPR018247 -
Cpe20g00336 648 MobiDBLite consensus disorder prediction 1 23 - -
Cpe20g00336 648 SUPERFAMILY TPR-like 481 619 IPR011990 GO:0005515
Cpe20g00336 648 Gene3D Tetratricopeptide repeat domain 328 424 IPR011990 GO:0005515
Cpe20g00336 648 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 8 646 - -
Cpe20g00336 648 Gene3D Tetratricopeptide repeat domain 124 327 IPR011990 GO:0005515
Cpe20g00336 648 ProSiteProfiles TPR repeat profile. 355 388 IPR019734 GO:0005515
Cpe20g00336 648 Pfam Tetratricopeptide repeat 556 617 - -
Cpe20g00336 648 ProSiteProfiles TPR repeat profile. 554 587 IPR019734 GO:0005515
Cpe20g00336 648 Gene3D Tetratricopeptide repeat domain 553 631 IPR011990 GO:0005515
Cpe20g00336 648 ProSiteProfiles TPR repeat profile. 140 173 IPR019734 GO:0005515
Cpe20g00336 648 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 8 646 - -
Cpe20g00336 648 Gene3D Tetratricopeptide repeat domain 468 552 IPR011990 GO:0005515
Cpe20g00336 648 MobiDBLite consensus disorder prediction 100 120 - -
Cpe20g00336 648 ProSiteProfiles TPR repeat profile. 588 621 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00336 - - - cmos:111431636 1263.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00484 Cpe-Chr19:4195859 Cpe20g00336 Cpe-Chr20:1890307 1.67E-06 dispersed
Cpe20g00336 Cpe-Chr20:1890307 Cpe09g00990 Cpe-Chr9:8766620 4.13E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g884 Blo04g00710 . . . . . . . Cmo13g00806 . . . . . . Cpe20g00336 . . . . . . . . . . . . . . . . . Cone13ag0196 . Lsi02g00462 Csa01g00919 Chy12g01208 Cme12g01629 . . . Bda14g00783 . Bpe15g00663 Bma03g00758 . . . . Cma13g00775 . Car13g00621 . . . Bhi08g01689 . . Lac10g0534 . . . Cla03g00319 . . . Clacu03g0337 Cmu03g0943 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009614 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00336 Cpe_Chr20 FPKM 15.679283 18.853146 9.19367 8.842845 2.588166 2.06276 2.967881 8.781961 8.185956 8.589707