Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00338 ATGGTGCTTCAAGCATCCATGGAGGAAGTCGATGAGAAACGATGTATCCAAATTCTGCCGCCAAAACTCGTTCTCCAGAAAAAAGAGCCGGCTCTTCAATGGCTCATCGGATCGCCGTTTCTGTCGCCTTTGACTATCGTCTCCACTCTCAGATGCATCCATCATTTGTCTCCACAGGAATCTGTCTCGCCTGATTTCACCAAGGAAGCAGAAGACCTGCGGACGTTATTATTGAAGGGTTTTTATATTATTGGAGCATTGGTTGTTGGAAATTTCAACGTCGAAGAACATGCGAGAAAGGCAATTGATGCGGCGAGGAGACTGAATCAGTTTTTATCTCATGGAGAAAAGTCGGAGAAACAGTTGTTGATTGGAGCGGTTGCTGATTTCAATTCCACAGATATTCATTTTTTTATCTCCGAGTCTGGAAATGGCACGAGCTTGGATTCTGTTTCTTCTGTTATGTACGAAAATAATCCCGAAAAATATATTTGGGAGAGAGGTTGTCTGCTCCGGTGTGAACTACCGATTAGTGTACCGCTCTATATTCCTCTCGATAGTCCATCAGATGTTGAAAAGACGTACACAAATGCCATAGAATCAGTTGTTTCCAAGTTGAGTGACCCACAGGTGGTATATGCAGTGGAATCGTTATATAAAAACTCCACAGAAGATCCTTGTCCAGTCATTCTACGTGGTTCACAAATGGATTTCCAAATTAATCTCTCAAAGATTAGGCATTTGAATGAAGGCAGCCAAAATGCTGATGGGATGTCTTTTCCATGTGAACACTTCTGTTTAAAAAGTAAAACTGAGTCCACAACGTTTTGTTCACAGAATGCAGATATAGTCCAAGTAAGTGTTCTTCTAAATAGCTCGGAAAAGTCTCAAAAATCTAATGCACCAGTTGTAGAATACTTGCCAGCTATGGACAAGGCCAGGCTTTTGGTTGTCGACTTGAAGGTAGAAGTTCTCTGTTATGCTGCCAAGTATCTTCCATTGACTTATGCTGTTTCAATGTTGGTCATTCCGGGTGTAGTTGATCACTTAAACTCGATGAAGAATGCAATATTACCCAACCTTTTAAAGCAACTTCCTCAGCTAGTGCCATATCATTTTTGTCCTCCCGGATTTTTGCATCCAATAACTGCTACCTATGAACTCACTTATGGGGAGACTGAAATGAAGCAAGTTGAATTAAGGAAAGCCCTACACCTAAGACTGGGGTTACCTTTTGATCGTCCTGTACTAAGAATTGCCAGTGCCTTGGATTTCTCTAGTAGGAAGGACAATTTGCCACGAAAGGGTTCCTTTTTGCTCAAAGATGTTCATATTGGAATTCCTAGTAGCGGTGTTTCTGGTGGCCAAACGTCTATTGTTCAAGGGTCGTATGAGTACCATCATTATCTTCAAGAAGGTTTCAATGACTCGGGCTGGGGTTGTGCTTACCGCTCTTTGCAGACCATCATTTCGTGGTTCAGACTCCAACATTATACATCCATAGATGTTCCTTCTCATAGGGAAATACAAGAAGCACTAGTGGAGATTGGTGACAAGGATGATTCATTTATTGGGTCACGCGAATGGATCGGCGCTATCGAATTGAGCTTTGTTTTAGACAAATTGCTCGGTGTGAGTTGCAAAATCATAAATGTCAGATCCGGGGCTGAACTTCCCGAAAAATGTAGAGAATTAGCTGCACACTTCGAGAATCAAGGAACTCCAATTATGATTGGAGGCGGTGTTCTTGCATACACGCTCTTGGGAGTTGATTACAACGAAGCAAGTGGAGATTGTGGGTTCTTAATCCTTGATCCTCATTACACGGGGAGTGATGACATCAAGAAAATTGTGAGTGGGGGTTGGTGTGGATGGAAGAAAGCCGTTGATAGCAAAGGGAAGAACTTCTTCTTACACGATAAGTTCTATAATCTTCTGCTGCCTCAGAGGCCAAACATGCGTTCCCGCCCTATAAGCTCATCACCGAGCAGCAAGCTATCCGAAGAACAAGCTCCCATGGCTCTTGTACACCAACACCACCTCCCACAGTCATTTCAGTCCATTCGCAAGGCCAATCTCAAACAATCCACTTCTAATTCTTGTTTATTTTTTCAATTCAGTAGTCGGAAGCTTTCCGGCTGCTTATGTGCGACATCTCCAAATCCCATCAGTCAGTCTCCTTCTCCGATTTTCCTCCAATTTCTCGAAGAAGAAGAAGAAGGAGAAGAAGAGGAGGAGGAAGAAGAAGAAGAACCTAAAGAAGTTATTGGAGGAAACACGACGGAAGATTGGAACGATCCATTAGTCAGATTTTTCAAATCCCGGACTTCAACAACGCAAGATCCATTACCCGAAAGCAAATTATCCCTTCAGAAGAACCGCCGTTCGTCTTGGCATCTTGCCTCCGACGTTGAATGTTCCGTTGAAGCTGAAATTGCACCCGATGAAGACAAGAAACAATCCGGTTTGGTGAGTAGGAATTCTAGGGCATTACCGGATGGTGTCGTCGGAGACATTGTGCGAACTGCGAGGAATTTGCCGCTAAATACCACTCTAGGAGAGGCTTTGGGTGATTTTGAAGGAAAAATTGATGAGAAAGAATGTCTGGAGGTGCTGCGCTTGTTGGGTGAGGAGAATCTTGTGGTATGTTGCTTGTATTTCTTTGAATGGATGGGGTTGCAGGAGCCTTCGCTTGTTACACCTCGTGCTTATTCTATTCTCTTTCCATTGTTGGGAAGAGCTGGAATGGGAGATAAAATTATGGTGTTGTTCAAGAACATTCCACTCAAGAAGGAGCTTCAGGATGTTCATGTGTATAATTCTGCAATGTCTGGGCTTATGGTCTGTAAGAGGTATAATGACGCTTGCGAGGTGTACGAGGCCATGGAAACAAACAATGTTAATCCCGATCATGTGACATGTTCTATAATGATTACAGTCATGAGAAAGATCGGTCGCAGTGCGAAGGATTCTTGGGATTACTTCGAGAAAATGAACGAAAAAGGAGTAAAATGGAGTCCAGAAGTTTTGGGTGCTCTGATTAAAGCGTTCTGTGACGAGGGGCTGAAGAGTCAAGCCCTCATCATCCAATTGGAGATGGAGAAGAAAGGGGTTACTTCGAACGCAATCATGTATAACACGATCATGGATGCATTTAGTAAATCAAACCAAATCGAGGAAGCTGAAGGTCTCTTTGCCGAAATGAAAGCCAAAGGAGTGAAACCAACGAGTGCAACTTTTAACATCTTAATGGATGCATACAGCAGGAGGATGCAACCCGAGATTGTCGAGAAGCTTCTGATCGAAATGAAGGACACGGGATTCGAGCCGAATGTGAAGTCATACACTTGCTTGATTAGTGCTTACGGGAGGAAGAAGACAATGAGCGACATGGCTGCAGATGCATTCTTGAGGATGAAAAAGAATGGTATAAGGCCAAATTCTCATTCATATACAGCTCTGACTCATGCTTATTCTGTTAGTGGTTGGCACGAGAAAGCTTACTCGACGTTCGAGAACATGCTGCAAGAAGGTTTAAAGCCTTCCATTGAAACTTACACGACGCTACTCGACGCGTTTAGGCGTGCAGGTGATACCGAGGCATTGATGAAAATCTGGAAGTTAATGATTAGAGAAAAAGTAGCAGGAACGAGAGTAACATTCAACATACTGCTAGATGGGTTTGCAAAACAAGGTCATTATATTGAAGCAAGAGATGTGATATCTGAGTTTAGCAAGATTGGGCTGCAGCCAACCGTTATGACATACAACATGCTGATGAACGCATATGCAAGGGGCGGTCAACATCTAAAGATGCCGCAGCTTCTGCAAGAGATGGCTGCTCGGGAGCTAAAACCTGACTCTGTTACTTACTCGACCATGATTTACGCGTTCGTACGTGTTCGGGATTTCAAACGAGCGTTCTTCTATCACAAGAAGATGGTAAAAAGTGGGCAAGTGCCTGATGTGAAGTCGTATCAGAAACTTCGATCAATTTTGGATGCGAAACTCGATACGAAGAACAGGAAGGATAAGAGTGCCATTTTGGGTATAATGAACAGCAAATTGGGTATGGTGAAAGCTAAGAAGAAGGGCAAGAAAGATGAGTTTTGGAAGAACAAGAGAAAGTATGTGAAAACTCTGAGAGTTTCTCCTAATGAACAAACGAAAGTGGAGACTGGGAGTTGA 4188 43.15 MVLQASMEEVDEKRCIQILPPKLVLQKKEPALQWLIGSPFLSPLTIVSTLRCIHHLSPQESVSPDFTKEAEDLRTLLLKGFYIIGALVVGNFNVEEHARKAIDAARRLNQFLSHGEKSEKQLLIGAVADFNSTDIHFFISESGNGTSLDSVSSVMYENNPEKYIWERGCLLRCELPISVPLYIPLDSPSDVEKTYTNAIESVVSKLSDPQVVYAVESLYKNSTEDPCPVILRGSQMDFQINLSKIRHLNEGSQNADGMSFPCEHFCLKSKTESTTFCSQNADIVQVSVLLNSSEKSQKSNAPVVEYLPAMDKARLLVVDLKVEVLCYAAKYLPLTYAVSMLVIPGVVDHLNSMKNAILPNLLKQLPQLVPYHFCPPGFLHPITATYELTYGETEMKQVELRKALHLRLGLPFDRPVLRIASALDFSSRKDNLPRKGSFLLKDVHIGIPSSGVSGGQTSIVQGSYEYHHYLQEGFNDSGWGCAYRSLQTIISWFRLQHYTSIDVPSHREIQEALVEIGDKDDSFIGSREWIGAIELSFVLDKLLGVSCKIINVRSGAELPEKCRELAAHFENQGTPIMIGGGVLAYTLLGVDYNEASGDCGFLILDPHYTGSDDIKKIVSGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPNMRSRPISSSPSSKLSEEQAPMALVHQHHLPQSFQSIRKANLKQSTSNSCLFFQFSSRKLSGCLCATSPNPISQSPSPIFLQFLEEEEEGEEEEEEEEEEPKEVIGGNTTEDWNDPLVRFFKSRTSTTQDPLPESKLSLQKNRRSSWHLASDVECSVEAEIAPDEDKKQSGLVSRNSRALPDGVVGDIVRTARNLPLNTTLGEALGDFEGKIDEKECLEVLRLLGEENLVVCCLYFFEWMGLQEPSLVTPRAYSILFPLLGRAGMGDKIMVLFKNIPLKKELQDVHVYNSAMSGLMVCKRYNDACEVYEAMETNNVNPDHVTCSIMITVMRKIGRSAKDSWDYFEKMNEKGVKWSPEVLGALIKAFCDEGLKSQALIIQLEMEKKGVTSNAIMYNTIMDAFSKSNQIEEAEGLFAEMKAKGVKPTSATFNILMDAYSRRMQPEIVEKLLIEMKDTGFEPNVKSYTCLISAYGRKKTMSDMAADAFLRMKKNGIRPNSHSYTALTHAYSVSGWHEKAYSTFENMLQEGLKPSIETYTTLLDAFRRAGDTEALMKIWKLMIREKVAGTRVTFNILLDGFAKQGHYIEARDVISEFSKIGLQPTVMTYNMLMNAYARGGQHLKMPQLLQEMAARELKPDSVTYSTMIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLRSILDAKLDTKNRKDKSAILGIMNSKLGMVKAKKKGKKDEFWKNKRKYVKTLRVSPNEQTKVETGS 1395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1904233 1913653 - Cp4.1LG20g03460.1 Cpe20g00338 486967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00338 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1147 1181 IPR002885 -
Cpe20g00338 1395 TIGRFAM PPR: pentatricopeptide repeat domain 1079 1112 IPR002885 -
Cpe20g00338 1395 TIGRFAM PPR: pentatricopeptide repeat domain 938 970 IPR002885 -
Cpe20g00338 1395 TIGRFAM PPR: pentatricopeptide repeat domain 1185 1214 IPR002885 -
Cpe20g00338 1395 TIGRFAM PPR: pentatricopeptide repeat domain 1114 1147 IPR002885 -
Cpe20g00338 1395 TIGRFAM PPR: pentatricopeptide repeat domain 1255 1288 IPR002885 -
Cpe20g00338 1395 TIGRFAM PPR: pentatricopeptide repeat domain 1219 1251 IPR002885 -
Cpe20g00338 1395 TIGRFAM PPR: pentatricopeptide repeat domain 1289 1323 IPR002885 -
Cpe20g00338 1395 TIGRFAM PPR: pentatricopeptide repeat domain 1149 1182 IPR002885 -
Cpe20g00338 1395 TIGRFAM PPR: pentatricopeptide repeat domain 1043 1076 IPR002885 -
Cpe20g00338 1395 PANTHER - 673 1380 - -
Cpe20g00338 1395 PANTHER OS03G0856100 PROTEIN 673 1380 - -
Cpe20g00338 1395 Pfam Pentatricopeptide repeat domain 1171 1228 IPR002885 -
Cpe20g00338 1395 Pfam Pentatricopeptide repeat domain 1098 1158 IPR002885 -
Cpe20g00338 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 970 1005 IPR002885 -
Cpe20g00338 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1041 1075 IPR002885 -
Cpe20g00338 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 935 969 IPR002885 -
Cpe20g00338 1395 Gene3D Tetratricopeptide repeat domain 989 1128 IPR011990 GO:0005515
Cpe20g00338 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1076 1110 IPR002885 -
Cpe20g00338 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1287 1321 IPR002885 -
Cpe20g00338 1395 Pfam Peptidase family C78 456 646 IPR012462 -
Cpe20g00338 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1111 1146 IPR002885 -
Cpe20g00338 1395 Pfam PPR repeat family 1041 1088 IPR002885 -
Cpe20g00338 1395 Pfam PPR repeat family 1251 1299 IPR002885 -
Cpe20g00338 1395 Pfam PPR repeat family 935 980 IPR002885 -
Cpe20g00338 1395 Gene3D Tetratricopeptide repeat domain 835 988 IPR011990 GO:0005515
Cpe20g00338 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1252 1286 IPR002885 -
Cpe20g00338 1395 SUPERFAMILY Cysteine proteinases 474 611 IPR038765 -
Cpe20g00338 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1182 1216 IPR002885 -
Cpe20g00338 1395 MobiDBLite consensus disorder prediction 737 753 - -
Cpe20g00338 1395 Gene3D - 438 654 - -
Cpe20g00338 1395 Gene3D Tetratricopeptide repeat domain 1129 1231 IPR011990 GO:0005515
Cpe20g00338 1395 Gene3D Tetratricopeptide repeat domain 1232 1349 IPR011990 GO:0005515
Cpe20g00338 1395 MobiDBLite consensus disorder prediction 737 765 - -
Cpe20g00338 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1217 1251 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00338 - - K01376 bhj:120069367 1204.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00338 Cpe-Chr20:1904233 Cpe04g00896 Cpe-Chr4:8182850 4.44E-12 dispersed
Cpe20g00338 Cpe-Chr20:1904233 Cpe11g00636 Cpe-Chr11:4106332 1.39E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g881 . Blo16g00244 . . . . Bma06g00239 . Cmo13g00800 . . . . . . Cpe20g00338 . . . . . . . . . . . . . . . . Cone16ag0055 . . Lsi02g00285 Csa01g00757 Chy12g01210 Cme12g01632 . . Bda11g01629 . . . . . Sed01g1812 . . Cma13g00771 . Car13g00618 . . . Bhi08g01369 Tan05g2119 Cmetu12g0770 Lac10g0339 Hepe07g2309 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003460 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 2 1 1 2 2 2 2 2 1 2 2 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00338 Cpe_Chr20 FPKM 5.987127 7.13081 8.211509 7.702833 12.576221 11.426003 12.050226 8.375429 7.554547 8.529297