Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00339 ATGGCACTGCCAACAGTCGTTCTCTCTCTCCTCTCCCTCTTTTTCCTCTCCGTCTCTCTCTCCGCCGCTCTCTCCGCCTCCCCTGCCGCTGTACCCAACCCGGAACTCGTCGTAGAAGAAGTACACAGATCCATAATCAATGCGACGAAGAGGAGAAATTTGGGGTATCTCTCATGTGGGACCGGAAATCCCATCGACGATTGCTGGCGGTGCGACCCGAATTGGGAGAAAAATCGTCAGAGACTAGCTGACTGTGGAATCGGCTTCGGCAAAAACGCCATCGGCGGTCGTGACGGCCAAATCTACGTCGTCACCGACGCCGGCGACGATGACCCTGTTAACCCCAAACCAGGAACTCTCCGTTACGCCGTAATCCAAGACGAACCCCTCTGGATCATCTTCGCTCGCGACATGGTCATTCGATTAAAAGAGGAACTAATCATGAACTCCTTCAAAACCATCGACGGCCGTGGTGCGAGCGTCCACATCGCCGGCGGCCCCTGCATTACGATTCAATACGTAACAAACATCATAATCCACGGTCTCAACATTCACGACTGTAAACCAGGGGGAAACACCGACGTTCGAGATTCCCCTCGGCATTTCGGATTCAGAACCATATCGGACGGCGACGGCGTTTCAATTTTCGGTGGTAGCCATGTTTGGGTCGATCATTGCTCTTTATCAAACTGTAACGATGGTTTAATCGACGCGATTCATGGGTCCACAGCCATCACGATTTCAAACAATTACATGACGCATCACGATAAAGTGATGCTATTAGGCCACAGCGATTCGTACACACAAGACAAGAATATGCAAGTCACCATAGCTTTCAATCACTTCGGCGAAGGGCTTGTTCAAAGAATGCCCAGATGCCGACATGGGTACTTCCATGTAGTGAACAATGACTACACGCATTGGGAAATGTACGCCATCGGAGGTAGCGCCGCGCCGACCATCAACAGTCAGGGGAACAGATTCGTTGCACCCAATGACAGATTCAGCAAAGAAGTGACGAAATACGAGGATGCACCGGAGAGTGAATGGAAGAATTGGAACTGGCGGTCGGTTGGGGATCTGATGGTAAACGGTGCGTTTTTCACAGCCTCCGGCGCCGAATCGTCGTCCAGCTACGCCAGAGCGTCGAGCTTAGGGGCGCGGCCGTCGTCTCTGGTCGGAACAATCACGACGAATGCGGGTGCACTGAGCTGCAGAAAGGGCTCCCGCTGCTGA 1236 52.75 MALPTVVLSLLSLFFLSVSLSAALSASPAAVPNPELVVEEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGQIYVVTDAGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKPGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKNWNWRSVGDLMVNGAFFTASGAESSSSYARASSLGARPSSLVGTITTNAGALSCRKGSRC 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1918062 1919705 + Cp4.1LG20g03360.1 Cpe20g00339 486968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00339 411 PANTHER PECTATE LYASE 18-RELATED 21 408 IPR045032 GO:0030570
Cpe20g00339 411 SMART amb_all 137 334 IPR002022 -
Cpe20g00339 411 Gene3D - 62 404 IPR012334 -
Cpe20g00339 411 Pfam Pectate lyase 147 328 IPR002022 -
Cpe20g00339 411 PANTHER PECTATE LYASE 22-RELATED 21 408 - -
Cpe20g00339 411 SUPERFAMILY Pectin lyase-like 39 406 IPR011050 -
Cpe20g00339 411 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Cpe20g00339 411 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Cpe20g00339 411 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Cpe20g00339 411 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Cpe20g00339 411 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cpe20g00339 411 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Cpe20g00339 411 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Cpe20g00339 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00775 Cpe20g00339 CCT
Cpe09g00992 Cpe20g00339 CCT
Cpe09g00992 Cpe20g00339 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02212 Cpe-Chr1:18815530 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe01g02313 Cpe-Chr1:19493905 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe05g00107 Cpe-Chr5:547453 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe07g00036 Cpe-Chr7:187888 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe10g00775 Cpe-Chr10:4407397 Cpe20g00339 Cpe-Chr20:1918062 9.10E-112 dispersed
Cpe11g00043 Cpe-Chr11:220647 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe12g00102 Cpe-Chr12:619595 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe13g00765 Cpe-Chr13:6983856 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe17g00243 Cpe-Chr17:1588320 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe19g00431 Cpe-Chr19:3875886 Cpe20g00339 Cpe-Chr20:1918062 2.75E-116 dispersed
Cpe20g00041 Cpe-Chr20:184730 Cpe20g00339 Cpe-Chr20:1918062 4.72E-89 dispersed
Cpe20g00339 Cpe-Chr20:1918062 Cpe09g00992 Cpe-Chr9:8789668 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00339 K01728 - csv:101209736 770.77