Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00340 AGGACAGGAACAGCAAATGCGGTGGAAAGGAAGGGGCCGAGAAACGTGCACATCGCTCCCCATTACGAAATGGAATCTACTCTTGCCGCCTCCGTCCCTCCCACCGCCCTTACCGACGACCTCTACTGCAATTTCCCGGCCACCGTTGTCTCCCAGATCGTTACGTCTTCCATATTCAGGGAGCTTCCTGAACCTGACGTCCAAATCCTTGCCTCCGGTGGACTTCGAATCCCGGCCCATTCCGGCATCCTGGCTTCGATTTCGCCGGTCCTCGAACAATTGATAGATCGGCCGAGGAAGAAGCGGAGCGCTATGAAAGTGATTTCGATCGTTGGAGTTCCCTCAGACGCCGTCGTTTCGTTCGTTCGGTTCCTCTACAGTTCTAGGTTTAGATCTGCATCTCTTACAAATTCCGGTTTCGATTTGATTTCAATTTCTGACGGAAAGGATGGAAAATTTCCTTGCAGATGCACGGTGGAGCATCTTGAGAAGCACGGAATTCATCTACTGGCTCTGTCGCACGTTTACATGGTGCCGCAATTGAAAGCGATGTGTACTAAAGATTTGGCTCAGCGGCTTACGATCGAAAGCGTTGTGGACGTTCTGCAACTCGCCAGGCTCTGCAACGCATCGGATCTTTACCTCAAATGCATGAAATTCGTGGCTGATCATTTTAAATTCGTTGAGAAAACTGAGGGATGGCAGTTTATTCAAGATCATGATCCTTGGCTTGAGCTTGATATTCTTAAGTTCATCGACGATACCGAATCGAGGAAACAGAGGAACAGGAGGATAAGAAAAGAGAGGAAGTTATACCTAGAGCTACACGAAGCGATGGAGTGTTTAGAACACATATGTTCAGAAGGGTGCACCATAGTGGGGCCCTACAACGTGGAGCCAAAGAAGGAGAGAGAACCCTGCAGCCATTACTCCACGTGTCACGGCCTCCAACTTCTGATCAAACACTTCGCCACGTGTAAGAAGCGGACCAACGGCGTAGGATGTGGGCGGTGCAAGCGCATGTGGCAGCTCCTGAAGCTCCACTCCTCCATCTGCGACCATTCCGAGTGCTGCAAAGTCCCTCTCTGCCGGAAATTCAAACAGCAGTCGTCGCCAGACGACGGCAACAAGCGCAAGGACGACGCGCAGTGGAAGATGCTTGTCAGGAAAGTGGTTTCCGCAAAAGCCATGTCTTCCCTGTCTTTGAGCAATGTGAAGATGCCGGATGTGGAGGAGGAGAGGGCCATCAGACAGCGTAGGATCGGGAGCTTTAGGTTGCAGTCGGGTCGACGGCAGAGATGA 1302 51.46 RTGTANAVERKGPRNVHIAPHYEMESTLAASVPPTALTDDLYCNFPATVVSQIVTSSIFRELPEPDVQILASGGLRIPAHSGILASISPVLEQLIDRPRKKRSAMKVISIVGVPSDAVVSFVRFLYSSRFRSASLTNSGFDLISISDGKDGKFPCRCTVEHLEKHGIHLLALSHVYMVPQLKAMCTKDLAQRLTIESVVDVLQLARLCNASDLYLKCMKFVADHFKFVEKTEGWQFIQDHDPWLELDILKFIDDTESRKQRNRRIRKERKLYLELHEAMECLEHICSEGCTIVGPYNVEPKKEREPCSHYSTCHGLQLLIKHFATCKKRTNGVGCGRCKRMWQLLKLHSSICDHSECCKVPLCRKFKQQSSPDDGNKRKDDAQWKMLVRKVVSAKAMSSLSLSNVKMPDVEEERAIRQRRIGSFRLQSGRRQR 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1924872 1927143 + Cp4.1LG20g03370.1 Cpe20g00340 486969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00340 433 Gene3D - 192 266 - -
Cpe20g00340 433 SMART BTB_4 65 193 IPR000210 GO:0005515
Cpe20g00340 433 Gene3D Potassium Channel Kv1.1; Chain A 55 190 IPR011333 -
Cpe20g00340 433 Pfam TAZ zinc finger 276 363 IPR000197 -
Cpe20g00340 433 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 155 416 IPR044513 -
Cpe20g00340 433 SUPERFAMILY POZ domain 66 222 IPR011333 -
Cpe20g00340 433 Pfam BTB/POZ domain 65 132 IPR000210 GO:0005515
Cpe20g00340 433 ProSiteProfiles BTB domain profile. 65 134 IPR000210 GO:0005515
Cpe20g00340 433 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 50 146 IPR044513 -
Cpe20g00340 433 SUPERFAMILY TAZ domain 267 368 IPR035898 -
Cpe20g00340 433 SMART TAZ_2 269 364 IPR000197 -
Cpe20g00340 433 Gene3D TAZ domain 267 395 IPR035898 -
Cpe20g00340 433 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 2 50 146 - -
Cpe20g00340 433 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 2 155 416 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00340 - - - csv:101209491 659.062
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00993 Cpe20g00340 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00478 Cpe-Chr10:2818858 Cpe20g00340 Cpe-Chr20:1924872 3.40E-82 dispersed
Cpe14g01074 Cpe-Chr14:8940520 Cpe20g00340 Cpe-Chr20:1924872 1.85E-07 dispersed
Cpe20g00036 Cpe-Chr20:166532 Cpe20g00340 Cpe-Chr20:1924872 8.79E-151 dispersed
Cpe20g00340 Cpe-Chr20:1924872 Cpe10g01065 Cpe-Chr10:6383317 2.38E-09 dispersed
Cpe20g00340 Cpe-Chr20:1924872 Cpe09g00993 Cpe-Chr9:8801639 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g876 . . Bda06g00628 Bda15g00529 Bpe12g00680 . Bma06g00237 Bma12g01066 Cmo13g00798 Cmo18g00179 . . . . . Cpe20g00340 . . . . . . . . . . . . . . . . . Cone13ag0191 Cone19ag0186 Lsi02g00455 Csa01g00912 Chy12g01212 Cme12g02054 . Blo15g00240 Bda11g01631 . Bpe07g00869 . . Bma08g00073 Sed08g2470 . . Cma13g00769 Cma18g00203 Car13g00983 Car18g00197 Cpe09g00993 . Bhi08g01684 Tan05g2884 Cmetu12g0322 Lac10g0529 Hepe07g2171 . . Cla03g00313 Cam03g0332 Cec03g0323 Cco03g0336 Clacu03g0333 Cmu03g0939 Cre03g0633 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001511 3 2 1 3 2 2 4 2 2 2 2 2 3 2 2 5 2 2 4 2 2 2 2 2 2 2 2 5 3 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51119 PF02135 zf-TAZ 1.60E-09 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00340 Cpe_Chr20 FPKM 0.0 0.0 0.0 0.0 0.0 0.053652 0.06306 0.052009 0.0 0.0