Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00347 ATGGCTTCCTCATCATCCCACCTTCTTCTAACTCTTCTCATCATTATCTCACTCATACAATCCTCCCATCAAGATTACTACACCCCAACCAAGAACAACATGAACATAATCGACTCTTGTTGGCGTTCATCCTCCAATTGGGCCAAAAACCGCCAAGCCTTAGCCAACTGCGCGGTGGGCTACGGCAAGGACGCAATTGGAGGCAAATTTGGCACCATTTACGTAGTCACCGACCCATCTGACAACCCTTCAAACCCCAAATATGGAACGTTGCGTTATGGTGTGATTCAAAACAAGCCACTTTGGGTTGTGTTTGCTAAGAGCATGGTTATTGTGTTGAAGAATGAGCTGATGATAAATAGTTTCAAGACCATTGATGGACGTGGTGCTAATGTGGAGATTGCTTATGGGCCTTGCATTACGGTGCAAGGGGTTAGCCATGTTATTATACATGGAATTAGTATCCATGATTGTAAGCCTGCCAAAGCTGGGCTTGTTAGAGACACTGTCACACATGTTGGCAAACGTAGAGGCTCTGATGGTGATGCCATTTCTATATTTGCTTCCTCCCATGTTTGGATTGATCATTGTTACTTAGCTCAATCCACTGATGCCAACAATCGATACGACGAGTGGAAAATGTACGCGATAGGTGGGAGTGCAAACCCCACAATCTTCAGTGAAGGGAACTACTTCGTAGCTCCCAAGAACTCAAATGCCAAACAGGTAACAAAGAGAGAGGTCAACAAAGGGTGGAATAACTGGAAATGGAGATCCTCAAGAGACGTGTTCTTGAACGGCGCTTACTTTGTGCAATCTGGGTGGGGAAGTTGCAGCCCATTCTACACAAGAGCTCAGTCCTTTCCAGTGGCTCCAGGCTCCAAGGTTCCAGCTTTGACTGCAAATTCTGGGCCACTTCGTTGCTCCATTGGCAAACGTTGC 942 46.18 MASSSSHLLLTLLIIISLIQSSHQDYYTPTKNNMNIIDSCWRSSSNWAKNRQALANCAVGYGKDAIGGKFGTIYVVTDPSDNPSNPKYGTLRYGVIQNKPLWVVFAKSMVIVLKNELMINSFKTIDGRGANVEIAYGPCITVQGVSHVIIHGISIHDCKPAKAGLVRDTVTHVGKRRGSDGDAISIFASSHVWIDHCYLAQSTDANNRYDEWKMYAIGGSANPTIFSEGNYFVAPKNSNAKQVTKREVNKGWNNWKWRSSRDVFLNGAYFVQSGWGSCSPFYTRAQSFPVAPGSKVPALTANSGPLRCSIGKRC 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1966050 1967671 + Cp4.1LG20g03400.1 Cpe20g00347 486976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00347 314 Gene3D - 206 307 IPR012334 -
Cpe20g00347 314 Gene3D - 34 205 IPR012334 -
Cpe20g00347 314 PANTHER PECTATE LYASE 16-RELATED 205 312 - -
Cpe20g00347 314 PANTHER PECTATE LYASE 18-RELATED 13 204 IPR045032 GO:0030570
Cpe20g00347 314 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cpe20g00347 314 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Cpe20g00347 314 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Cpe20g00347 314 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Cpe20g00347 314 SMART amb_all 108 238 IPR002022 -
Cpe20g00347 314 PANTHER PECTATE LYASE 18-RELATED 205 312 IPR045032 GO:0030570
Cpe20g00347 314 SUPERFAMILY Pectin lyase-like 29 308 IPR011050 -
Cpe20g00347 314 PANTHER PECTATE LYASE 16-RELATED 13 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00347 Cpe-Chr20:1966050 Cpe01g02313 Cpe-Chr1:19493905 1.86E-92 dispersed
Cpe10g00775 Cpe-Chr10:4407397 Cpe20g00347 Cpe-Chr20:1966050 3.81E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00347 K01728 - csv:101211379 404.445