Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00379 ATGTTGGGAGGGCATGATTATGAAGAACATCATGATGAGGAGGATGTTGTTCTTCTGGAGATGACCCAGAAAAACTTCGAAACGGAGCTGGAGAAGTTTGGGGAAGATGATCAGTTGGAGAGCAGCAGCAGATCGGTGAAGGACGCCGCCATGGGAGAGGACCCATTTCTTCACAATCACACTAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATCCAGGAAATGGAAGCGTTCTTTAAGGAATGTCCTCACCCAGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTAGGGCTGGATCCCCTCCAAGTCAAGTTCTGGTTTCAAAACAAGCGTACCCAACTCAAGGCTCAACATGAACGCCATGAGAACGCAATCTTGAAGGCTCAAAACGAGAAACTAAGAGCAGAGAACATGCGGTACAAGGAAGCTCTAAGCAACACCAGCTGCCCCAATTGTGGCGGCCCTGCCGCTCTTGGCGAGATGTCCTTTGATGACCAACATTTGAGGATCGACAATGCGCAGCTAAGAGACGAGATTGAGAGATTAAACTCAGTTGCTAGCAAGTTTGCTGGGAAGCCATGGGCTTCCCATTCTCGCATCCCGCCCTGCGCCCTTGATCTTGGGGTTGGCAGAGCATTGCAGCCGCCCCAAGCAGAGTTCTTAGGGGAAATTTATGGAGTTGGAGACATGTTGAAGTCTGTCACTACTGAAATTGATAAGCCAGTGATCGTTGAGCTTGCTGTTTCAGCCATGGAAGAACTTTGCAGAATGGCTCACGCAGGTGAACCCTTGTGGGTTCCTGGGGAAAACTCCATGGAAATGCTTAATGAAGATGAGTACCTCAGGACTTACTCTACAGGAATTGGCCCAAGAATTCTGGGGCTCAGCCTTGAAGCTTCAAGAGAAACTTCCATTGTGGCTTTCAATCATTTAAAACTTGTCGACATTCTCATGGACGTCAATCAGTGGTCAAACATATTTTGTGGGATTGTTTCGAGAGCGTTGACCCTCGAAGTTTTGTCAACGGGAGTTGGTGGCAACTATAATGGAGCTCTCCACGTCATGACGGCAGAGTTTCAAGTTCCTTCTCCTTTAGTTCCGACTCGAGAAAATTACTTTGTGAGATATTGTAAGCAGCAGACAGATCGGAGTTGGGCTGTAGTCGATGTCTCGCTAGACTATTTACGTCCTACTCCAACGTCAAGGACTCGAAGAAGACCGTCGGGTTGCTTAATCCAAGAACTTCCCAATGGTTACTCAAAGATTATGTGGGTGGAACATGTTGAAGTGGATGATCGAGCGGTACACAATTTGTACAAACGAGTGGTCACTTGTGGGCTTGCCTTCGGCGCCAAACGATGGGTGGCTACGCTTGATCGACAGTGCCAACGCCTGACCAACTCCTCTGCTGCCAATATTCCTGCAGTGGACATATGCGTGGTAACCGGGCAAGAGGGGAGGAGGAGCGTAATGAAGCTAGCAGAGAGAATGGTTAGGAGCTTCTGCAGTGGCGTTGGAGCTGCTTCTGCACACAATTGGACAACATTATCCACAATTGATTCCGACCATGTTCGAGTCATGGCAAGAAAGAGCCTCGACGACCCCGGGCGACCTCCCGGAATTGTTCTAAATGCAGCAACTTCATTCTGGATTCCAATTCCCCCTAATAGGGTCTTCCATTTTCTTCGAGATCAAAACACTCGCAGTCAATGGGATGTTCTTTCAAATGGTGGGTTGGTCCAAGAAATGGCTCGCATTGGCAATGATCGCAACCCGGGGAACTGTGTGTCGTTGCTTCGTGTTAACAGTACAAATTCAAGCCAGAGCAACATGCTGATACTACAAGAGAGTTGCAGCGACATCAGTGGTTGCTACATAACCTATGCACCAGTCGACACCGTCGCTATGAACATGGTGTTGAGCGGCGGAGACCCTGATTACGTTGCTCTGTTGCCGTCTGGATTCGCCATACTGCCTGATGGACCTAGTGGCCCCGATGCGCCAGCGGGAATTCTGGAGTTCGGGTCCGGTGGTTCCTTGTTGACAGTTGCATTTCAGATATTGGTGGATTCAGTGCCAACGGCCAAACTGTCTCTAGGGTCGGTGGCGACGGTGAACAGCCTCATCAAGTGCACGGTCGAGCGGATTAGAGCTGCGGTCATGTGTGAGCATCCATGA 2190 49.41 MLGGHDYEEHHDEEDVVLLEMTQKNFETELEKFGEDDQLESSSRSVKDAAMGEDPFLHNHTNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKELSRELGLDPLQVKFWFQNKRTQLKAQHERHENAILKAQNEKLRAENMRYKEALSNTSCPNCGGPAALGEMSFDDQHLRIDNAQLRDEIERLNSVASKFAGKPWASHSRIPPCALDLGVGRALQPPQAEFLGEIYGVGDMLKSVTTEIDKPVIVELAVSAMEELCRMAHAGEPLWVPGENSMEMLNEDEYLRTYSTGIGPRILGLSLEASRETSIVAFNHLKLVDILMDVNQWSNIFCGIVSRALTLEVLSTGVGGNYNGALHVMTAEFQVPSPLVPTRENYFVRYCKQQTDRSWAVVDVSLDYLRPTPTSRTRRRPSGCLIQELPNGYSKIMWVEHVEVDDRAVHNLYKRVVTCGLAFGAKRWVATLDRQCQRLTNSSAANIPAVDICVVTGQEGRRSVMKLAERMVRSFCSGVGAASAHNWTTLSTIDSDHVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFHFLRDQNTRSQWDVLSNGGLVQEMARIGNDRNPGNCVSLLRVNSTNSSQSNMLILQESCSDISGCYITYAPVDTVAMNMVLSGGDPDYVALLPSGFAILPDGPSGPDAPAGILEFGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIRAAVMCEHP 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2136801 2141326 - Cp4.1LG20g03790.1 Cpe20g00379 487008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00379 729 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Cpe20g00379 729 ProSiteProfiles START domain profile. 240 471 IPR002913 GO:0008289
Cpe20g00379 729 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 41 726 - -
Cpe20g00379 729 SUPERFAMILY Bet v1-like 489 721 - -
Cpe20g00379 729 Coils Coil 115 150 - -
Cpe20g00379 729 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Cpe20g00379 729 SUPERFAMILY Bet v1-like 240 469 - -
Cpe20g00379 729 Pfam START domain 250 468 IPR002913 GO:0008289
Cpe20g00379 729 SMART HOX_1 62 125 IPR001356 GO:0003677
Cpe20g00379 729 Pfam Homeodomain 64 119 IPR001356 GO:0003677
Cpe20g00379 729 CDD homeodomain 63 122 IPR001356 GO:0003677
Cpe20g00379 729 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 41 726 IPR042160 -
Cpe20g00379 729 Gene3D - 307 468 IPR023393 -
Cpe20g00379 729 SMART START_1 249 468 IPR002913 GO:0008289
Cpe20g00379 729 CDD START_ArGLABRA2_like 244 467 - -
Cpe20g00379 729 MobiDBLite consensus disorder prediction 33 66 - -
Cpe20g00379 729 Gene3D - 56 138 - -
Cpe20g00379 729 SUPERFAMILY Homeodomain-like 50 121 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00792 Cpe20g00379 CCT
Cpe19g00972 Cpe20g00379 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00085 Cpe-Chr5:414591 Cpe20g00379 Cpe-Chr20:2136801 7.97E-21 dispersed
Cpe05g01445 Cpe-Chr5:10078047 Cpe20g00379 Cpe-Chr20:2136801 1.38E-56 dispersed
Cpe09g00102 Cpe-Chr9:569079 Cpe20g00379 Cpe-Chr20:2136801 0 dispersed
Cpe15g00102 Cpe-Chr15:758765 Cpe20g00379 Cpe-Chr20:2136801 1.95E-17 dispersed
Cpe15g00193 Cpe-Chr15:1602997 Cpe20g00379 Cpe-Chr20:2136801 2.05E-136 dispersed
Cpe16g00448 Cpe-Chr16:5744649 Cpe20g00379 Cpe-Chr20:2136801 4.91E-11 dispersed
Cpe10g00792 Cpe-Chr10:4503487 Cpe20g00379 Cpe-Chr20:2136801 2.24E-31 wgd
Cpe15g00750 Cpe-Chr15:7784636 Cpe20g00379 Cpe-Chr20:2136801 6.98E-137 wgd
Cpe19g00972 Cpe-Chr19:6850520 Cpe20g00379 Cpe-Chr20:2136801 0 wgd
Cpe02g00755 Cpe-Chr2:4827195 Cpe20g00379 Cpe-Chr20:2136801 1.75E-116 wgd
Cpe20g00379 Cpe-Chr20:2136801 Cpe04g00733 Cpe-Chr4:7208678 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51121 PF01852 START 8.70E-49 CL0209 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00379 K09338 - csv:101212604 1190.25