Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00389 ATGGTCAATGCCATCGCCCTCTGCAGAGGAGACCTTAACCCAGAGCTCTGTCGCAGTTGCATCAGCGACTCTGTTTTGGACCTTCCCGAACAATGTCCCAATCAAAAGGAAGCTGTAATTTGGTACCCCAATTGCATGTTTCGCTATTCGGATCGACGGATTGTTGGGGTTTTGCGAGACACTCCTGCTTTTTGGATGTGGAACATTCAAGATGCGGTGGACCTGCAAGGGTTCAGCCTGGTGGTGCAGGGGCTGCTGGCGGACCTCGCAAAGGAGGCTGCTTCAGGGGATTCTAAGCTCAAGTTTGCTGCTGGGAATGTCAGCACTTTGAATGAGGATTATTTGAATGTTTATGGAATGATGCAATGCACGCCGGATATTTCACAGGCACAGTATGAGATTGTCAGTTTCTTTAACTCTACAGCCGTTTCGAGAGTTTCCCAGTCGCCCCGACCGCCGCCGACACCGCCATCACCTCCCTCCCTTTCACCAAATACAACCACCAATGCAGCAGGAAACGAGTCCGAGAGCTTAAAGACTGTCATCATAATAGTTGTTCCAATGGTTGTGGCTCTTGTATTTGTGGCATTAATTGTCAGCATCTTCATGTTTCTAAGAGCAAGAAAACAAAGGGTTAATGGAATTGCAAATCCGTTAAGAAGTCAAGATTTGGACTGGAATGCACGTTACAAGATCATTGGAGGTGTTGCTAGGGGTCTTGTTTATCTTCACGAAGATTCTCAAATTAAAATCGTTCATCGAGATCTCAAACCTGCTAATATTTTGTTAGACGCAGAAATGAATCCAAAAATTTCAGATTTTGGTATGGCAAGGTTGTTTCTACCCGATCAAACACGAGGAGATACAAGTAGAATTGTAGGAACTCAGGGATACATGGCTCCGGAGTATGCAATGTATGGAAAGTTTTCAAACAAGTTGGACGTGTTTAGCTTCGGTGTGTTAGTCTTGGAGATTGTGAGCGGTCAGAAAAACAGCTCTTTCCGTCAGGAAGATAACATACATGATCTTATAAGCTACGCATGGAAGAACTGGAGGGCAGGAACAGCCTTGAATGTTGTAGATCCCATTTTGAGAAGTGGGTCAGTTAGTGAAATGAAGAAATGTATTCATATTGGGTTGCTTTGTGCTCAAGAAGATTCAGCTGATAGGCCAACTATGGACACTGTTCTTCTCATGCTTAATAGTGACACAATCACTCTCCCAATACTTTCTCCACCACCTGATTTCATGAGTATGAGCCTCACATCAGACATGTCTGGTTCCCATACCCAGTTTGCCGTTGCCTTTTTGGTTCTATCGCTTGCCATTAATGTTTCTCACGCCAAACAAATTAAACCCTTCTTCGATTTCATTGAGTTTGATGACTTTCTTAACAAAACCCAACAATGGAAAACGAGTTTTCGTCTCCATTTCCATCAAACCCAGTTGCCGTTTTCGCCTCCCATTGTGATTGCCGGAGTTCTCTGTTTTATCGCCGCTTCTTTATCCAGCGCCGGCGGGATTGGCGGCGGTGGGCTTTACATACCTATTTTGACGATTGTGGCTGGTGTGGACCTCAAAACAGCGTCTAGCCTCTCGGCTTTTATGGTCACTGGAGGGTCGATTGCGAATGTATTTAACAGTTTGTTCTCTAAAAGATCCAAATCAGAGGGGAAGTGTTTGATTAACTTTGATATTGCTCTTTTGACTGAACCGTGCATGTTATTGGGAGTGAGTATTGGAGTTTTATGTAACCTTGCGTTTCCTGAGTGGGTTACTACTATTCTGTTTGCCATTTTTCTTGCTTGGTCGACTTTGAAAACATGTAAAAGTGGGATGGTGTACTGGAAAATGGAAACAGAAGAGCATAGGAATAATGGGTGTAATTTGGAAGATGCATTAGAGAATGAAAATGAAACCATAGCTTTTGAAGAGCCTCTGTTGCCTACACAGAACGATCCCAGATTGAGGCTTCCTTCAATGAAGTTAGGGGCCTTGGTTCTTGTCTGGTCTTGTTTCTACCTTATTTATCTTCTTCGTGGCAACCGCGATGGACAGGGTCTTTTACCGATAGAAACGTGTGGAACGGGTTACTGGGTTATCTCTTCTCTCCAAGTTCCAGTGGCCATAGCTTTCACTCTCTGGATTCTTCACAAACAGAAGGGTCCTCAACCTGAAGATTCCCCACAGAAGGAGCTAGAAGAAGCACGGCCTGCAGTTGAACCATCAAAGAAACTGATCTTCCCAGTAATGGCACTTTTAGCTGGGATTTTGGGTGGCATGTTTGGAATTGGCGGTGGCATGCTTATAAGCCCTTTCCTTCTTCAAGAAACGGCAGCAACTTGCTCCTTCATGGTGTTCTTTTCGGCTACAATGTCAGCTTGCCAGTATTTGCTGCTGGGAATGGAGCATGCTGAAATTGCAGTGATCTTCGCGATCGTCTGCTTCATTACCTCGGTGCTCGGGTTGGTAGTGATTCAGAAGGGGATTCGTGACTATGGAAGGGCATCTCTCATCATCTTCTCAGTTAGTATAGTGATGGCTTTGAGTACTGTTTTGATGACCACATTTGGTGCCCTCAATGTTTTGAGTCAGTCGACTTTGTTTGAAAGCAGCTCAATGGTTTGGCCAAGATTCTTGTGTTCTTCACCTTCCCTGTTTCTGGGTTTCGTGATTTTCTTGGTATCCATTACTTGGCAACGCATGGCAACGAGTCAGTCAGATTTCGAATACTATAATTGCCAAAATGAACAAGGGAACTACACCGCTAACAGTACCTACAAAGCCAATCTTGATCACCTCCTCTCCACCTTTACCACCCACCGCCAAATCGACTACGGTTTCTACAACCTCTCTTACGGCCATGACCGCGAAGCTAATGCTATTGGTCTGTGCAGAGGAGACGTCGGGCCAAGCGATTGCCAAACATGCCTCAACAACACTATAACCCTTCTCATAGAAAACTGTCCCACCCAGATTGAGACTATTGGATGGTACGACGAGTGTATGTTTCGTTACTCCGACCGCTCCATCTTCGGCGTCATGGAGCCTTCCCCTGCTGTCTTTTCCTCGAGAACTCGTAATGCTTCAGACCCAAAACGGTTCACTCAGGCGGCCAGGAATTTGCTTGAGCAACTCACCTCTGAAGCTGCAGCGGGTGATTCTCGTCTGAAATTTGCCGCTGGAGACGCCGAAATTCCCAATTACTGGCCCATTTATGGGGCTGTGCAGTGCACTCCTGATTTGTCTGCCAATGATTGCACCAACTGCCTGCTTGGTGCTATTGATCAAATTCGAGATTGTTGTGATGGGAAGATGGGCGGGAGAGTTGGAAGACCCAGTTGTAATATTAGATTTGACATCGATCCCTTCATTCAGAATCGGCCGGAGTCAGCGCCACCACCGCTTAATTTACCAAACACAACTACTACTACTACTACTACTCCGCAAGGCAATTTACAGTTCATCCTGTTCTATTCGCTTCTTTTTCTTTCTTCATCTCTTAACTCATTACAGAGTGCCCTGTTTTTATTTCCAGGAAACTCATCTGGAATAGTCGTCTTCATTGTTGTGCCTCTCATTGTGGTTATCGTAGCTGCTGTCGCCCTTATCATCATCAGCATCTTCTTAAAGACAAGAAAGCTAAGGAGCTATTCAGCTCAAAATCCCATAAAGCGTGAGCGTTTAGATTGGAAGACTCGGTACAGTATCATAGACGGCATTGTTCGAGGACTTGTATATCTCCACGAAGACTCTCAACTTACAATTATTCATCGAGATCTCAAAGCTTGTAACATTTTATTAGACGCAGAGATGAATGCTAAGATTTCAGATTTCGGGACTGCGAAACTATTCAATCATGATCAAACACAAGGAAATACAAAAAGAATCATGGGCACTTTTGGATACATGGCTCCAGAGTATGCATGGAACGGTCGTTTCTCAGTGAAGACAGATGTGTTTAGTTTTGGCGTCCTAATCTTGGAGATAGTGAGTGGACAAAAGAATAATCGAGCTCAAACCAACAAGGAGGTCGAAGAAAGTCTCGTCAGCCTTGCATGGAGAAGTTGGGGGAATGGGAATGCTTTAGATATTGTTGATCCTTGCTTGAGAAATGGGTCAAGAATGGAAATGGGGAGATGCATTCATATTGGATTGTTATGTGTTCAAGCAAATTTAGGTGCGAGGCCAACGATGAGCACTGTGCTTCTCATGCTCAACAATGGGTCCTTCTCTTTGCCAACGCCCTCTCAACCTGCCTTCTTCGTCAACAGTGCTGCCTCTCGAATGCGTGGACAATCTCAAGGTCACAATGAAACTCAAGGTCTAAATGACATGTCCATTTCTGAGTTATATCCACGTTAG 4365 44.79 MVNAIALCRGDLNPELCRSCISDSVLDLPEQCPNQKEAVIWYPNCMFRYSDRRIVGVLRDTPAFWMWNIQDAVDLQGFSLVVQGLLADLAKEAASGDSKLKFAAGNVSTLNEDYLNVYGMMQCTPDISQAQYEIVSFFNSTAVSRVSQSPRPPPTPPSPPSLSPNTTTNAAGNESESLKTVIIIVVPMVVALVFVALIVSIFMFLRARKQRVNGIANPLRSQDLDWNARYKIIGGVARGLVYLHEDSQIKIVHRDLKPANILLDAEMNPKISDFGMARLFLPDQTRGDTSRIVGTQGYMAPEYAMYGKFSNKLDVFSFGVLVLEIVSGQKNSSFRQEDNIHDLISYAWKNWRAGTALNVVDPILRSGSVSEMKKCIHIGLLCAQEDSADRPTMDTVLLMLNSDTITLPILSPPPDFMSMSLTSDMSGSHTQFAVAFLVLSLAINVSHAKQIKPFFDFIEFDDFLNKTQQWKTSFRLHFHQTQLPFSPPIVIAGVLCFIAASLSSAGGIGGGGLYIPILTIVAGVDLKTASSLSAFMVTGGSIANVFNSLFSKRSKSEGKCLINFDIALLTEPCMLLGVSIGVLCNLAFPEWVTTILFAIFLAWSTLKTCKSGMVYWKMETEEHRNNGCNLEDALENENETIAFEEPLLPTQNDPRLRLPSMKLGALVLVWSCFYLIYLLRGNRDGQGLLPIETCGTGYWVISSLQVPVAIAFTLWILHKQKGPQPEDSPQKELEEARPAVEPSKKLIFPVMALLAGILGGMFGIGGGMLISPFLLQETAATCSFMVFFSATMSACQYLLLGMEHAEIAVIFAIVCFITSVLGLVVIQKGIRDYGRASLIIFSVSIVMALSTVLMTTFGALNVLSQSTLFESSSMVWPRFLCSSPSLFLGFVIFLVSITWQRMATSQSDFEYYNCQNEQGNYTANSTYKANLDHLLSTFTTHRQIDYGFYNLSYGHDREANAIGLCRGDVGPSDCQTCLNNTITLLIENCPTQIETIGWYDECMFRYSDRSIFGVMEPSPAVFSSRTRNASDPKRFTQAARNLLEQLTSEAAAGDSRLKFAAGDAEIPNYWPIYGAVQCTPDLSANDCTNCLLGAIDQIRDCCDGKMGGRVGRPSCNIRFDIDPFIQNRPESAPPPLNLPNTTTTTTTTPQGNLQFILFYSLLFLSSSLNSLQSALFLFPGNSSGIVVFIVVPLIVVIVAAVALIIISIFLKTRKLRSYSAQNPIKRERLDWKTRYSIIDGIVRGLVYLHEDSQLTIIHRDLKACNILLDAEMNAKISDFGTAKLFNHDQTQGNTKRIMGTFGYMAPEYAWNGRFSVKTDVFSFGVLILEIVSGQKNNRAQTNKEVEESLVSLAWRSWGNGNALDIVDPCLRNGSRMEMGRCIHIGLLCVQANLGARPTMSTVLLMLNNGSFSLPTPSQPAFFVNSAASRMRGQSQGHNETQGLNDMSISELYPR 1454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2183693 2198975 + Cp4.1LG20g03930.1 Cpe20g00389 487018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00389 1454 ProSiteProfiles Gnk2-homologous domain profile. 1017 1124 IPR002902 -
Cpe20g00389 1454 ProSiteProfiles Gnk2-homologous domain profile. 909 1011 IPR002902 -
Cpe20g00389 1454 Gene3D Transferase(Phosphotransferase) domain 1 214 406 - -
Cpe20g00389 1454 Gene3D Transferase(Phosphotransferase) domain 1 1211 1412 - -
Cpe20g00389 1454 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 1218 1431 - -
Cpe20g00389 1454 ProSiteProfiles Gnk2-homologous domain profile. 1 54 IPR002902 -
Cpe20g00389 1454 SUPERFAMILY Protein kinase-like (PK-like) 1215 1406 IPR011009 -
Cpe20g00389 1454 Pfam Protein kinase domain 227 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00389 1454 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 887 1216 - -
Cpe20g00389 1454 Pfam Protein tyrosine and serine/threonine kinase 1190 1349 IPR001245 GO:0004672|GO:0006468
Cpe20g00389 1454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1256 1268 IPR008271 GO:0004672|GO:0006468
Cpe20g00389 1454 Pfam Sulfite exporter TauE/SafE 708 836 IPR002781 GO:0016021
Cpe20g00389 1454 Pfam Sulfite exporter TauE/SafE 425 607 IPR002781 GO:0016021
Cpe20g00389 1454 MobiDBLite consensus disorder prediction 1429 1454 - -
Cpe20g00389 1454 SUPERFAMILY Protein kinase-like (PK-like) 218 400 IPR011009 -
Cpe20g00389 1454 MobiDBLite consensus disorder prediction 149 163 - -
Cpe20g00389 1454 ProSiteProfiles Protein kinase domain profile. 1104 1421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00389 1454 SMART serkin_6 67 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00389 1454 MobiDBLite consensus disorder prediction 145 172 - -
Cpe20g00389 1454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Cpe20g00389 1454 Pfam Salt stress response/antifungal 1027 1120 IPR002902 -
Cpe20g00389 1454 Pfam Salt stress response/antifungal 914 1008 IPR002902 -
Cpe20g00389 1454 Pfam Salt stress response/antifungal 2 51 IPR002902 -
Cpe20g00389 1454 Gene3D - 62 133 IPR038408 -
Cpe20g00389 1454 Gene3D - 1020 1124 IPR038408 -
Cpe20g00389 1454 Gene3D - 906 1010 IPR038408 -
Cpe20g00389 1454 Gene3D - 1 53 IPR038408 -
Cpe20g00389 1454 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 887 1216 - -
Cpe20g00389 1454 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 216 420 - -
Cpe20g00389 1454 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 3 213 - -
Cpe20g00389 1454 MobiDBLite consensus disorder prediction 1429 1447 - -
Cpe20g00389 1454 ProSiteProfiles Protein kinase domain profile. 87 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00389 1454 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 216 420 - -
Cpe20g00389 1454 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1218 1431 - -
Cpe20g00389 1454 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 213 - -
Cpe20g00389 1454 ProSiteProfiles Gnk2-homologous domain profile. 60 175 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00256 Cpe-Chr10:1540837 Cpe20g00389 Cpe-Chr20:2183693 1.18E-25 dispersed
Cpe15g00759 Cpe-Chr15:7821555 Cpe20g00389 Cpe-Chr20:2183693 5.05E-19 dispersed
Cpe20g00389 Cpe-Chr20:2183693 Cpe14g00709 Cpe-Chr14:4671123 2.25E-55 dispersed
Cpe20g00389 Cpe-Chr20:2183693 Cpe20g00390 Cpe-Chr20:2193306 6.04E-108 tandem
Cpe10g00802 Cpe-Chr10:4550348 Cpe20g00389 Cpe-Chr20:2183693 2.17E-21 wgd
Cpe20g00389 Cpe-Chr20:2183693 Cpe09g00887 Cpe-Chr9:8082440 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63082 PF07714 PK_Tyr_Ser-Thr 2.60E-26 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00389 - - csv:101208650 661.373