Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00406 ATGCCAACGTACGCTTTCTATAACAGAGTTTCCAGACTTTTCCGGGACCATCCGTCGTTTTCCAGGCTCCTTGTTCTTGTCTCCGTTAGTGGGGGGAGCCTTGTAGCATATGCTGATGCTAGCCCAACGAATGGGGTACCCAGTATTGCATCCAAAGTCAATGTAGATGAGAAAAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCGTCGTATGAGGTTCAAGTGATATCACCTCGAAATTATTTTGCGTTCACCCCATTATTACCAAGTGTTACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCCATTCGCAACATTGTGAGAAAGAAAAGGGTAGACATTAGATTCAATGAAGCAGAATGCTACAAGATTGATGCTAAAAACAAAAAACTCTACTGCCGATCTAACGAAAACAACAATCTGAATGGAAAAAAGGAATTTGTTGTGGACTACGACTACCTGGTGATATCTGTGGGAGCACAAGTTAATACATTCAATACTCCTGGCGTTGTGGAGAATTGCCATTTCTTAAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGCCTGCCTACCCTGGATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTATTGTTGGAGGTGGCCCCACTGGTGTGGAATTTGCAGCAGAACTTCATGATTTTGTTAATGAGGACTTGGTCAAGTTATATCCTGGACTTCAAAATTTTGTAAGAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACCGGATCGATGGTAATCAAGGTAACTGATAAAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCCTCTATGCCTTATGGAATGACTGTATGGTCAACTGGAATAGGAACGCGTCCGATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACCGACGAATGGCTTCGAGTTGAGGGATGTGACAATGTATACGCACTTGGTGACTGCGCTACTATAAATCAGCGAAGAGTCATGGAGGATATTTCAGCAATTTTTATCAAGGCAGACAAAGACAATTCTGGGACACTAACAGTTAAAGAATTTAAAGAAGTCATTGATGACATATGTGAAAGATATCCCCAGGTGGAGCTATATTTGAAGAATAAGCAAATGCACGACATTGTTGATCTTTTAAAAGGATCCAAAGGGGATGTGGCAAAGGAATCAATCGCACTAGACATTGAAGAGTTTAAATCCGCCCTTTCCCAAGTTGATTCACAAATGAAAAACCTTCCTGCTACCGCACAGGTGGCTGCACAACAAGGCGCATATCTTGCCCATTGTTTTAACCGTATGGAAGAATGCGAAAGCAATCCTGAAGGTCCTCTGAGGTTTAGGGGATCAGGACGCCACCGCTTTCGGCCCTTTAGGTACAAACATCTTGGACAATTTGCACCATTAGGAGGAGAACAAACGGCTGCACAACTTCCTGGAGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTATTCTGTCTATGCAAGCAAGCAAGTGAGTTGGCGGACAAGAGCACTAGTGGTAACGGATTGGACAAGGCGTTTTGTTTTTGGAAGAGATTCGAGTCGCATATGA 1755 42.51 MPTYAFYNRVSRLFRDHPSFSRLLVLVSVSGGSLVAYADASPTNGVPSIASKVNVDEKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKRVDIRFNEAECYKIDAKNKKLYCRSNENNNLNGKKEFVVDYDYLVISVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLDEEDRKKILHFAIVGGGPTGVEFAAELHDFVNEDLVKLYPGLQNFVRITLLEAGDHILNMFDKRITAFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRRVMEDISAIFIKADKDNSGTLTVKEFKEVIDDICERYPQVELYLKNKQMHDIVDLLKGSKGDVAKESIALDIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMEECESNPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFVFGRDSSRI 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2317680 2323432 - Cp4.1LG20g04090.1 Cpe20g00406 487035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00406 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 62 81 - -
Cpe20g00406 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
Cpe20g00406 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 226 244 - -
Cpe20g00406 584 Gene3D - 51 402 - -
Cpe20g00406 584 Gene3D - 427 583 - -
Cpe20g00406 584 SUPERFAMILY FAD/NAD(P)-binding domain 217 379 IPR036188 -
Cpe20g00406 584 SUPERFAMILY FAD/NAD(P)-binding domain 59 278 IPR036188 -
Cpe20g00406 584 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Cpe20g00406 584 PANTHER NADH DEHYDROGENASE 4 584 IPR045024 GO:0003954|GO:0006116
Cpe20g00406 584 SUPERFAMILY EF-hand 375 470 IPR011992 -
Cpe20g00406 584 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509
Cpe20g00406 584 PANTHER NAD(P)H DEHYDROGENASE B2 4 584 - -
Cpe20g00406 584 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 385 IPR023753 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01477 Cpe-Chr5:10212332 Cpe20g00406 Cpe-Chr20:2317680 0 dispersed
Cpe16g00661 Cpe-Chr16:6951532 Cpe20g00406 Cpe-Chr20:2317680 3.38E-14 dispersed
Cpe15g00785 Cpe-Chr15:7955594 Cpe20g00406 Cpe-Chr20:2317680 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00406 K03885 - csv:101204145 1115.14