Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00409 ATGAACGACTTATTCTCGAATTCGTTCAAACAATACACGGATCTGAAGCAACAGGCGTCTGTGGACGGCATGGAGTCTGGGAATGAGACTGTGAATTTGGACACGTTCTTCGAGGATGTCGAGAATGTTAAAGACGACATGAAACAGGTCGAGAATTTGTACAAGAAATTGCAACAGGACAATGAGGAATGCAAGATTGTCCACAATGCCAAGACGATGAAGGAGCTGAGGGGTAGAATGGAGGCCGATGTCGCCCAGGTTCTGAAGCGTGTCAAAATGATTAAAGGCAAACTCGAGGCTCTGGATCGTTCCAACGCCGCTCACCGCAGCCTCCCCGGTTGCGGCCCTGGCTCCTCCGCGGACCGAACCCGAACCTCCGTCGTCAGCGGCTTGGGGAAGAAGCTCAAAGATGTCATGGATGAGTTTCAAGGCCTCAGAGGTCGAATGAACGCCGAATACAAAGAAACCATCGAGCGCAGGTACTTCACAGTGACAGGGCAGAAAGCCGACGAAGAGACAATAGAGAATTTGATAGCAAGTGGGGAAAGCGAGAGCTTCCTCCAGAAGGCAATTCAAGAACAGGGGAGGGGTCAGATAATGGACACAATCTCAGAGATTCAGGAGCGACACGACGCTGTGAAGGAGATAGAGAAGAATTTGTTAGAGCTGCATCAAATTTTCTTGGACATGGCGGCGCTGGTCGAGGCACAAGGGCACCAGCTGAACGACATCGAGAGCCATGTCGCGCATGCGAACTCGTTCGTGAGAAGAGGAACAGAGCAGCTTCAGGAAGCCAGAGAGATACAGAAGGACTCGAGGAAGTGGACTTGCTATGCCATTATCTTGGGGGTTGTTCTTATTATAATCATCCTCTTCCCGATCTTGACTACAATTTTACCTCATTTGTTGTAG 912 49.89 MNDLFSNSFKQYTDLKQQASVDGMESGNETVNLDTFFEDVENVKDDMKQVENLYKKLQQDNEECKIVHNAKTMKELRGRMEADVAQVLKRVKMIKGKLEALDRSNAAHRSLPGCGPGSSADRTRTSVVSGLGKKLKDVMDEFQGLRGRMNAEYKETIERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREIQKDSRKWTCYAIILGVVLIIIILFPILTTILPHLL 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2339171 2340607 + Cp4.1LG20g04010.1 Cpe20g00409 487038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00409 303 CDD SNARE_syntaxin1-like 202 264 - -
Cpe20g00409 303 SMART SynN_4 28 154 IPR006011 GO:0016020
Cpe20g00409 303 PANTHER SYNTAXIN 6 294 IPR045242 -
Cpe20g00409 303 CDD SynN 33 190 IPR006011 GO:0016020
Cpe20g00409 303 Pfam SNARE domain 240 291 IPR000727 -
Cpe20g00409 303 Gene3D - 193 298 - -
Cpe20g00409 303 SMART tSNARE_6 198 265 IPR000727 -
Cpe20g00409 303 Coils Coil 33 67 - -
Cpe20g00409 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Cpe20g00409 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe20g00409 303 Gene3D - 33 160 - -
Cpe20g00409 303 PANTHER SYNTAXIN-124-RELATED 6 294 - -
Cpe20g00409 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Cpe20g00409 303 Pfam Syntaxin 36 238 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00316 Cpe-Chr3:1660184 Cpe20g00409 Cpe-Chr20:2339171 2.40E-122 dispersed
Cpe05g01447 Cpe-Chr5:10094018 Cpe20g00409 Cpe-Chr20:2339171 8.08E-36 dispersed
Cpe08g00962 Cpe-Chr8:7547582 Cpe20g00409 Cpe-Chr20:2339171 9.28E-121 dispersed
Cpe10g01038 Cpe-Chr10:6053022 Cpe20g00409 Cpe-Chr20:2339171 3.44E-90 dispersed
Cpe16g00449 Cpe-Chr16:5752206 Cpe20g00409 Cpe-Chr20:2339171 1.55E-34 dispersed
Cpe19g00189 Cpe-Chr19:1539921 Cpe20g00409 Cpe-Chr20:2339171 1.18E-94 dispersed
Cpe19g00503 Cpe-Chr19:4303812 Cpe20g00409 Cpe-Chr20:2339171 1.64E-109 dispersed
Cpe03g00938 Cpe-Chr3:6854115 Cpe20g00409 Cpe-Chr20:2339171 1.59E-94 transposed
Cpe20g00409 Cpe-Chr20:2339171 Cpe09g00868 Cpe-Chr9:7946431 1.19E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00409 K08486 - csv:101217140 515.383