Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00437 ATGGAGGAAGATCCTAATTCTTGGTTAAGAAGAACCAAGTTTTCTCACACAATATGCTATCGTTTAGAGTCCTTACGATTGGCTTCCTTTCCTGCCGCCACTCACCCACCACTCAACTCAGTTGCACAATCAAGATCTCATGTTCTTAACAAGCAGAGGTCCTTGTCTCCGGCTCCGCCTCCACAAACTACACTTTCCGATGCATTTAAGAGTGCACGTACCGATCAGAAGCGGTTTTCAACGCCGCCGCCTCAGAGGAAGGCACCTGGAAAAGACAAGGGTAGAAGACTATTTAGTAAAAAAGCTAAGGAGCGCAATTCCTTAAAGGAAGAGAAATTAAAAGGCCTTCTGAGGCATTTTGCCTCATTTAAAGGCAATGGGAAGTCCAAGTTCAAGGAGTCTTCTTGGACAAGGTTTTTTGAGCACAATGGAGGGAAGGTCACCGCTGTCGAGGCTGTAGATGAATCGTCTATTGACCTGTCGAAGTTGAGTTTTGGGCATAAATTTGCTTTCGGAGCTCATAGTCGGCTTTACCATGGACTTTACGAAGATAACGTTGTTGCTGCTAAGATGATCAATCTACCAGTCGATGACGAAAATGGAGAACTCGCAGGTCGCTTAAAAAAGCAGTTTGATAGGGAAGTAACCCTTTTATCTCGTCTCCGCCATCCCAACGTTATAAAGTTGCTGCTTGAAAAGAAAAAGTATCTGTGTTATGAATTATGTATGAACAGTATTGTATTTGCCATTGCTTTACAGTTGGTAGCAGCTGTGAAAATGCCACCCGTTTATTGCATAATCACTGAGTATCTACCTCTGGGTTCCTTAAGGGCATATCTTCACAAACTTGAAAAAAAATCTCTCCCATTGCAAAAACTATTTGCTATTGCCTTGGACATTGCTCGTGGGATGGAATACATTCACTCACAAGGCGTCATTCATCGGGATCTCAAACCTGAAAACGTTCTTATTGATGAAAACTTTTGTCTAAAGATTGCCGATTTCGGCATCGCTTGTGAGGAGGCACGTTGTGATACATTAGCGGAGGACCCTGGAACTTTTCGTTGGATGGCCCCCGAGATGATCAAACGTAAACCTTATGGAAGAAAGGTTGATATGTACAGCTTTGGACTCATCCTGTGGGAATTAGTAGCTGGAAAAATCCCTTACGAGGATATGACTCCCATCCAAGCAGCTTTTGCAGTTGTAGATAAGAATATTAGACCGGTGATCCCGAGCGAGTGTCCTCCAGTGATGCAGGCGTTGATCGAGCAATGTTGGTCCACGCAACCAGGAGAGAGGCCGGAGTTTTGGCAGGTGGTAAAAGTATTAGAGCAGCTTGAGAGTTGTGTTGGGGGAGATGGTGAAGTGTAG 1374 44.32 MEEDPNSWLRRTKFSHTICYRLESLRLASFPAATHPPLNSVAQSRSHVLNKQRSLSPAPPPQTTLSDAFKSARTDQKRFSTPPPQRKAPGKDKGRRLFSKKAKERNSLKEEKLKGLLRHFASFKGNGKSKFKESSWTRFFEHNGGKVTAVEAVDESSIDLSKLSFGHKFAFGAHSRLYHGLYEDNVVAAKMINLPVDDENGELAGRLKKQFDREVTLLSRLRHPNVIKLLLEKKKYLCYELCMNSIVFAIALQLVAAVKMPPVYCIITEYLPLGSLRAYLHKLEKKSLPLQKLFAIALDIARGMEYIHSQGVIHRDLKPENVLIDENFCLKIADFGIACEEARCDTLAEDPGTFRWMAPEMIKRKPYGRKVDMYSFGLILWELVAGKIPYEDMTPIQAAFAVVDKNIRPVIPSECPPVMQALIEQCWSTQPGERPEFWQVVKVLEQLESCVGGDGEV 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2510681 2513534 - Cp4.1LG20g04440.1 Cpe20g00437 487066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00437 457 SMART serkin_6 163 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00437 457 MobiDBLite consensus disorder prediction 41 81 - -
Cpe20g00437 457 Pfam Protein tyrosine and serine/threonine kinase 248 444 IPR001245 GO:0004672|GO:0006468
Cpe20g00437 457 Gene3D Phosphorylase Kinase; domain 1 153 234 - -
Cpe20g00437 457 MobiDBLite consensus disorder prediction 88 104 - -
Cpe20g00437 457 CDD STKc_MAP3K-like 170 444 - -
Cpe20g00437 457 MobiDBLite consensus disorder prediction 41 104 - -
Cpe20g00437 457 PRINTS Tyrosine kinase catalytic domain signature 371 393 IPR001245 GO:0004672|GO:0006468
Cpe20g00437 457 PRINTS Tyrosine kinase catalytic domain signature 415 437 IPR001245 GO:0004672|GO:0006468
Cpe20g00437 457 PRINTS Tyrosine kinase catalytic domain signature 306 324 IPR001245 GO:0004672|GO:0006468
Cpe20g00437 457 PRINTS Tyrosine kinase catalytic domain signature 268 281 IPR001245 GO:0004672|GO:0006468
Cpe20g00437 457 PRINTS Tyrosine kinase catalytic domain signature 352 362 IPR001245 GO:0004672|GO:0006468
Cpe20g00437 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672|GO:0006468
Cpe20g00437 457 Gene3D Transferase(Phosphotransferase) domain 1 271 451 - -
Cpe20g00437 457 ProSiteProfiles Protein kinase domain profile. 163 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00437 457 SUPERFAMILY Protein kinase-like (PK-like) 150 444 IPR011009 -
Cpe20g00437 457 PANTHER TYROSINE KINASE FAMILY PROTEIN 249 456 - -
Cpe20g00437 457 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 235 - -
Cpe20g00437 457 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 249 456 - -
Cpe20g00437 457 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 235 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00236 Cpe-Chr20:1347646 Cpe20g00437 Cpe-Chr20:2510681 5.86E-101 dispersed
Cpe20g00437 Cpe-Chr20:2510681 Cpe11g00660 Cpe-Chr11:4407567 1.15E-86 dispersed
Cpe10g00193 Cpe-Chr10:1119287 Cpe20g00437 Cpe-Chr20:2510681 0 wgd
Cpe19g01019 Cpe-Chr19:7105612 Cpe20g00437 Cpe-Chr20:2510681 0 wgd
Cpe20g00437 Cpe-Chr20:2510681 Cpe09g00837 Cpe-Chr9:7723890 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63087 PF07714 PK_Tyr_Ser-Thr 6.40E-52 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00437 - - cmax:111495774 850.506