Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00461 ATGATGATGGCAGAGAGAAAGAAGAACGATGAAGATCAGGAGGGAGGAATTAAGCTGTTTGGGGCCACTATTATGTTGCATAACAACCGGATACTTAAAGAAGAGCCCAACGATTCAGATCAACAATCGACAGAAAAAAGGCCTGACAAGATCATCCCCTGTCCGAGATGCAAAAGCATGGACACCAAATTTTGTTACTTCAATAATTACAATGTTAATCAACCACGCCATTTCTGTAAGGGCTGCCAGAGGTATTGGACCGCCGGTGGGGCCCTCCGTAATGTCCCTGTTGGAGCCGGCCGCCGAAAAACCAAACCCCCTTGCCAGACTTTTGGTGGGTTGCCGGAAAATTGCGTCTTTGATTCTTCAGGGATCGTGGCGGTGCAGCCGTTTGAGTTGGAAGGGATGGTTGAGGAGTGGCATGTCGTCGCTGCAGCTGCACAGGATGGGTTCCGGCAAATTTTACCGGTAAAGCGACGGAGGGGTTACCAAGACGGTCAAATCTGTTGA 510 49.41 MMMAERKKNDEDQEGGIKLFGATIMLHNNRILKEEPNDSDQQSTEKRPDKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCQTFGGLPENCVFDSSGIVAVQPFELEGMVEEWHVVAAAAQDGFRQILPVKRRRGYQDGQIC 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2663589 2664098 - Cp4.1LG20g04560.1 Cpe20g00461 487090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00461 169 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 13 161 - -
Cpe20g00461 169 PANTHER CYCLIC DOF FACTOR 2 13 161 IPR045174 GO:0003700|GO:0006355
Cpe20g00461 169 Pfam Dof domain, zinc finger 50 105 IPR003851 GO:0003677|GO:0006355
Cpe20g00461 169 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Cpe20g00461 169 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00808 Cpe20g00461 CCT
Cpe10g00145 Cpe20g00461 CCT
Cpe19g01067 Cpe20g00461 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00461 Cpe-Chr20:2663589 Cpe02g01058 Cpe-Chr2:9712224 2.88E-37 dispersed
Cpe10g00145 Cpe-Chr10:906579 Cpe20g00461 Cpe-Chr20:2663589 5.87E-51 wgd
Cpe19g01067 Cpe-Chr19:7305124 Cpe20g00461 Cpe-Chr20:2663589 2.44E-54 wgd
Cpe20g00461 Cpe-Chr20:2663589 Cpe09g00808 Cpe-Chr9:7508869 1.28E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51129 PF02701 zf-Dof 4.20E-32 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00461 - - csv:101204978 292.737