Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00467 ATGGAGAAGAAGAGTTCCATTTTAATGCAAAGGTACGAGCTTGGGAGGATGCTTGGGCAGGGCACTTTTGCCAAAGTCTACCATGCTCGTAACCTTAAGTCAGGCCAGAGCGTGGCCATCAAGGTCATTAATAAAGAGAAAGTGATGCGTGTTGGGTTGATCGACCAAATCAAGAGGGAAATCTCTGTGATGCGCCTTGTCCGCCATCCCAATGTAGTGCAGCTTTACGAGGTCATGGCTAGCCGGACCAAGATCTATTTTGCCATGGAGTATGTCAAAGGTGGGGAGCTTTTTGATAAGGTGGCTGAAGGCAAGCTCAAGGAAGACGCTGCTCGTAAGTACTTTCAGCAGCTCATTGGCGCTGTTGATTATTGCCATAGCCGTGGCGTCTACCATAGAGATATCAAGCCTGAAAATCTCCTCCTTGATGAGTTTGGGAATCTCAAGATTTCTGATTTTGGGTTGAGTGCTTTGGCTGAGTCTAGGCGGCAAGATGGGCTTCTTCATACCACTTGCGGCACTCCTGCCTATGTCGCCCCTGAAGTCATCAACAAGAAAGGTTATGATGGAGCTAAAGCTGACATTTGGTCATCTGGGGTTGTCCTGTTTGTTCTTCTGGCGGGTTATCTCCCTTTCCACGACCCAAATCTAATGGAAATGTACAGAAAAATCTCGAGAGGAGAATTCAAATGCCCTCACTGGTTTCCCCCAGAAGTTCGCAAGCTGCTCTCAAGAATCCTAGACCCAAATCCACAAACCAGAATAAAAATGGCCAAACTAATGGAAAATTCATGGTTCAAAAAGGGTTTCAGCGCAAATGTAGCAACTCCAAAGCCGCTTCAAATTAATCGAAACATGTCGGGTGTGAGCGACGTCCAGATCGATTTCGACGACAGCAGCTCGGAGGAAGGCTCTGTTAGTACAAGCAACGAGAGTGGAACACCACCAGCAGGCAGAACCCCAAGGAGAAACCATTCCTTCAATGCATTCGACATCATATCTCTGTCGCCAGGTTTTGATCTGTCGGGTCTGTTCGAGAGCGACGTGAATGAGAGGCCGCAGTCACGTTTCACGACAACGAAGCCAGAGTCGGCGATCGTGTCGAAGTTTGAAGAGATAGCAGAAATGGAAAGGTTCAAGGTGATGAAGAAAGATGGGTTAGTGAAACTGCAGGGGAGCAAACAGGGGAGGAAAGGACAATTGGCTATAGACGCAGAGATATTTGAAGTGACGCCTTCGTTTTTTGTGGTGGAGGTGACAAAAACAGCAGGGGACACATTGGAATACAGGAAATTTTACGACAAAGACATGAGGCCTTGCCTTAAGGACATTGTGTGGACTTGGGAAGGAAATGAACAACCAACCACATAA 1371 47.26 MEKKSSILMQRYELGRMLGQGTFAKVYHARNLKSGQSVAIKVINKEKVMRVGLIDQIKREISVMRLVRHPNVVQLYEVMASRTKIYFAMEYVKGGELFDKVAEGKLKEDAARKYFQQLIGAVDYCHSRGVYHRDIKPENLLLDEFGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGYLPFHDPNLMEMYRKISRGEFKCPHWFPPEVRKLLSRILDPNPQTRIKMAKLMENSWFKKGFSANVATPKPLQINRNMSGVSDVQIDFDDSSSEEGSVSTSNESGTPPAGRTPRRNHSFNAFDIISLSPGFDLSGLFESDVNERPQSRFTTTKPESAIVSKFEEIAEMERFKVMKKDGLVKLQGSKQGRKGQLAIDAEIFEVTPSFFVVEVTKTAGDTLEYRKFYDKDMRPCLKDIVWTWEGNEQPTT 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2703149 2705225 + Cp4.1LG20g04670.1 Cpe20g00467 487096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00467 456 ProSiteProfiles NAF domain profile. 322 346 IPR018451 GO:0007165
Cpe20g00467 456 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00467 456 MobiDBLite consensus disorder prediction 297 324 - -
Cpe20g00467 456 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00467 456 PANTHER - 2 454 - -
Cpe20g00467 456 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cpe20g00467 456 Pfam NAF domain 326 383 IPR004041 GO:0007165
Cpe20g00467 456 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00467 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cpe20g00467 456 CDD CIPK_C 328 442 - -
Cpe20g00467 456 Gene3D Kinase associated domain 1, KA1 322 447 - -
Cpe20g00467 456 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 20 2 454 - -
Cpe20g00467 456 CDD STKc_SnRK3 11 265 - -
Cpe20g00467 456 Gene3D Transferase(Phosphotransferase) domain 1 2 313 - -
Cpe20g00467 456 SUPERFAMILY Protein kinase-like (PK-like) 8 332 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00800 Cpe20g00467 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00911 Cpe-Chr3:5862134 Cpe20g00467 Cpe-Chr20:2703149 3.30E-170 dispersed
Cpe06g00299 Cpe-Chr6:1642721 Cpe20g00467 Cpe-Chr20:2703149 3.06E-178 dispersed
Cpe10g00992 Cpe-Chr10:5638980 Cpe20g00467 Cpe-Chr20:2703149 0 dispersed
Cpe11g01018 Cpe-Chr11:8572895 Cpe20g00467 Cpe-Chr20:2703149 0 dispersed
Cpe18g00559 Cpe-Chr18:6124703 Cpe20g00467 Cpe-Chr20:2703149 2.58E-178 dispersed
Cpe19g00146 Cpe-Chr19:1152168 Cpe20g00467 Cpe-Chr20:2703149 0 dispersed
Cpe10g00139 Cpe-Chr10:885645 Cpe20g00467 Cpe-Chr20:2703149 0 wgd
Cpe19g01074 Cpe-Chr19:7327724 Cpe20g00467 Cpe-Chr20:2703149 0 wgd
Cpe20g00467 Cpe-Chr20:2703149 Cpe09g00800 Cpe-Chr9:7438499 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63088 PF00069 Pkinase 3.80E-73 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00467 K07198 - csv:101206082 806.979