Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00474 ATGATGGTTTCTGATGTTCCCATTTGCCACACTTGTGGTGAGCCAGTCGGTGTCGATGCCAATGGAGAGGCATTCGTTGCCTGCCATGAGTGCCATTTTCCTATTTGCAGAGTCTGCGTTCAGTATGATATTAAGGAAGGCAGAAATGTTTGCTTGCGTTGTGGGTCTCTATTTGACGAGAACTTGCTGATGGATGCTGATACGAAGAGATCAGGAGATGAAAACACAATGGCATCTCATCTCAGTCATTCACAGGACGTTGCAGTGCATGCTAGACATATCAGCAGTGTGTCAACAGTGGATAGTGAATTGAATGATGAATCTGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAACAAAAAGAAAAGGCCTACCGTGAAGACTGAACAGGAAGCTCAAATTCCTCCCCAACAACAAATGGAAGAGAAACAGATTTCAGAGGCGGCTGCGGTTACACACACATTTTCTTCAGTTTATCCAATTCCATCCAGTAGATTAACACCATACAGAATTGTGATAATCATGAGATTGATCATTCTAGCTCTTTTCTTCCAGTATCGAATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTTACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCATGGGTGTTGGATCAGTTCCCTAAATGGTCTCCCGTGTGCAGAGACACATTCATTGACAGATTATCGGCCAGGTTTGAAAGAGAGGGAGAACCTTCCCAGCTTGCTGCTGTGGACTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAAGTTTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTCACATTTGAATCTCTTGTTGAGACAGCCGACTTTGCAAGAAAGTGGGTTCCATTCTGCAAGAAATTTTCCATTGAACCTCGAGCTCCTGAGTTTTACTTCTCACAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGTAGAGCAATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCAAAGGCTCAGAAAACGCCAGATGAAGGCTGGTTCATGCAAGATGGAACAGCTTGGCCAGGAAATAATCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGCAATACTGGCGCCCATGACATAGAGGGTAATGAACTTCCTCGACTAGTCTATGTCTCCAGAGAGAAGAGGCCTGGTTACCAACATCACAAAAAAGCCGGCGCTGAAAATGCTCTGGTAAGAGTATCTGCAGTGCTCACAAACGCCCCCTTCATTCTCAATCTTGACTGTGATCACTATGTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTAATGGACCCACAAGTAGGCCGAGATGTATGCTACGTTCAATTTCCTCAGAGGTTTGATGGCATTGACCGAAGTGATCGATATGCAAATCGCAACACAGTTTTCTTTGATGTCAACATGAAAGGATTGGATGGCATCCAGGGACCAGTTTACGTGGGTACAGGTTGTGTTTTTAATAGACAGGCTCTTTATGGCTACGGACCTCCTACTATGCCTAGCTTATCTAAGACATCCTCATCATCCTGCTCTTGGTGTGGCTGCTGTTCGTGCTGCTGTCCTTCCAAGAAGATCTCAAAAGATCCAACTGAAATTCAGAGAGATGTAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCAGGGAAATAGATAATTATGATGAGTACGAGAGGTCCATGCTAATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCTTATCTTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTCGCAGAATCTGCTAATTCATCGATTTTGATCAAAGAAGCAATTCATGTCATTAGCTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATATGGTTCAGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCTTGAGGCCAGCATTCAAAGGATCAGCACCCATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTCTCAGTAGACATTGCCCATTATGGTATGGATTTGCAGGCGGTCGGCTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCCTTCACCTCCCTCCCTCTCGTTGCGTACTGCTCATTGCCTGCAATCTGCCTGCTGACAGGAAAATTTATCATACCAACGCTCTCAAACCTAGCAAGTACTCTTTTTCTGGGTCTCTTCTTGTCCATCATTCTCACAAGTGTTCTTGAGCTGCGTTGGAGTGGTGTTAGCATCGAAGATCTATGGCGTAATGAGCAATTCTGGGTCATCGGAGGCGTCTCGGCCCATCTCTTTGCTGTTTTCCAAGGATTCCTAAAGATGTTAGCTGGTGTGGACACCAACTTCACAGTTACTGCAAAGGCAGCTGACGACGCCGAGTTTGGGGAGCTATACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACTCTTATTGTTGTTAACATGGTCGGTGTCATTGCTGGATTTTCCGATGCACTAAATGGTGGATATGAAGCCTGGGGACCTCTTTTTGGCAAGGTATTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTTATGGGTCGCCAAAACCGGACTCCAACCATTGTTGTTCTGTGGTCTGTACTGTTGGCATCAGTTTTCTCACTTGTCTGGGTGAAGATAAACCCATTTGTGAACCAAATTGACAGCACAACCATTGCACAAAGCTGCATTGCAATAGATTGTTGA 2952 43.83 MMVSDVPICHTCGEPVGVDANGEAFVACHECHFPICRVCVQYDIKEGRNVCLRCGSLFDENLLMDADTKRSGDENTMASHLSHSQDVAVHARHISSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPTVKTEQEAQIPPQQQMEEKQISEAAAVTHTFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWSPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWFMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTMPSLSKTSSSSCSWCGCCSCCCPSKKISKDPTEIQRDVKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANSSILIKEAIHVISCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAADDAEFGELYMVKWTTLLIPPTTLIVVNMVGVIAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQIDSTTIAQSCIAIDC 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2736791 2742852 - Cp4.1LG20g04780.1 Cpe20g00474 487103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00474 983 Pfam Cellulose synthase 255 974 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cpe20g00474 983 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 983 - -
Cpe20g00474 983 MobiDBLite consensus disorder prediction 119 146 - -
Cpe20g00474 983 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 2 983 - -
Cpe20g00474 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Cpe20g00474 983 SUPERFAMILY Nucleotide-diphospho-sugar transferases 269 776 IPR029044 -
Cpe20g00474 983 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 407 548 IPR029044 -
Cpe20g00474 983 Pfam Zinc-binding RING-finger 7 58 IPR027934 -
Cpe20g00474 983 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 552 581 IPR017896 -
Cpe20g00474 983 SUPERFAMILY RING/U-box 3 77 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00795 Cpe20g00474 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00474 Cpe-Chr20:2736791 Cpe19g00060 Cpe-Chr19:447906 0 dispersed
Cpe20g00474 Cpe-Chr20:2736791 Cpe09g00795 Cpe-Chr9:7404230 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00474 K10999 - csv:101208988 1912.12