Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00477 ATGGATGATGTTACCTTCAACAATAACCACCAATTCTATTCTGTTGATCTTTTAGAAGATAGCGACGGATTCAAGGCAGCCCCTGCTTCTCCTCCGCCTCCTAATTCCACCGCCGCCGCCGCCAAGAAGGGAAGAAGAGGGATGAAGAAGAAAGTGGTGTCGGTGCGGATTAATGGCGACGGCCCAAGGAATTCCTCTGGTTCTACAACTCCACCTTCTGATTCTTGGGCCTGGAGAAAGTACGGCCAAAAGCCCATCAAGGGCTCCCCTTATCCCAGGGCGTATTATAGGTGTAGTAGCTCCAAGGGATGTCCGGCGAGGAAGCAAGTGGAGAGGAACCGGCTTGATCCGACCATGTTGCTCATTACTTATTCCTGCGAGCATAACCATTCCGGTCCGGTTTCCAGAAACAACAATCATAACCAAGCCGCCGCCATCGCCGCCGTGAAACCCACTTCGCCAGAGACGGTTCCGGTTCATCCAGAACCGGAACCGGAACCGGAGGCGGAAGAGAAATTTGTGGAGTCGTTAGAGGACCAGTTCAGCTGGTTTGGGGAAATGGAAACCACGTCGTCCACAGTGCTCGAAACCTCCATTTTCTCGGGGAGATCATCCAGCGGAGTGGGAGATTCGATTTCCAGTGACGTGGCAATGCCTTTTCCGATGGGGGATGATGACGTGGACGACTCTCTCTTTGCGGATCTCGGGGAGTTGCCGGAGTGCTCTGTCGTGTTCCGACACGGCGGAGGCCCGGGATTACCAGTCGATGAACAACCGCCTACAACCCAGCGGCGGATCACTCCTTGGTGCGGAGCCACCACTTGA 825 54.55 MDDVTFNNNHQFYSVDLLEDSDGFKAAPASPPPPNSTAAAAKKGRRGMKKKVVSVRINGDGPRNSSGSTTPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLLITYSCEHNHSGPVSRNNNHNQAAAIAAVKPTSPETVPVHPEPEPEPEAEEKFVESLEDQFSWFGEMETTSSTVLETSIFSGRSSSGVGDSISSDVAMPFPMGDDDVDDSLFADLGELPECSVVFRHGGGPGLPVDEQPPTTQRRITPWCGATT 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2758523 2759590 + Cp4.1LG20g04680.1 Cpe20g00477 487106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00477 274 MobiDBLite consensus disorder prediction 250 274 - -
Cpe20g00477 274 SMART WRKY_cls 72 132 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe20g00477 274 Gene3D WRKY domain 62 134 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe20g00477 274 SUPERFAMILY WRKY DNA-binding domain 69 132 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe20g00477 274 MobiDBLite consensus disorder prediction 260 274 - -
Cpe20g00477 274 MobiDBLite consensus disorder prediction 23 80 - -
Cpe20g00477 274 PANTHER OS01G0750100 PROTEIN 36 272 - -
Cpe20g00477 274 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 36 272 IPR044810 GO:0003700
Cpe20g00477 274 MobiDBLite consensus disorder prediction 59 76 - -
Cpe20g00477 274 ProSiteProfiles WRKY domain profile. 73 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe20g00477 274 Pfam WRKY DNA -binding domain 74 130 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00793 Cpe20g00477 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00477 Cpe-Chr20:2758523 Cpe09g00709 Cpe-Chr9:6350681 9.10E-35 dispersed
Cpe15g00822 Cpe-Chr15:8165599 Cpe20g00477 Cpe-Chr20:2758523 1.89E-45 wgd
Cpe20g00477 Cpe-Chr20:2758523 Cpe04g00801 Cpe-Chr4:7578058 6.15E-54 wgd
Cpe20g00477 Cpe-Chr20:2758523 Cpe09g00793 Cpe-Chr9:7355688 2.77E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51131 PF03106 WRKY 7.90E-25 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00477 - - csv:101203902 368.622