Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00479 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGGAGAAGGAGATCGCCGTCGTTGGAGGTATTTTTGGCCCCTGTTGACCTCTCCGATGTGGCCTTAGTTCGAACCCTGGCGATAGTTGCGACGGAGCTCGTTTCCCGATTTTCACAGAAATCCTTCTTCTTTCAGCGGAGGAATTCGCGATCTCTGATAAGGAAACTGGAGGTGTGTTTAGTCTTTTTGGACTGTTTGAAGGATTCCGGTGCTACTTTGCCTCACACGGCGTTGCTCTGTTTGAAGGAGCTTTATTTGTTGTTGTATCGGTCTAAGATACTCCTTGATTATTGCTCCGAATCGAGTAAGTTATGGATGTTGCTTCAGAACCACTCGATTTCCGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTCCCTTTTGAGGAAGTTGAATTAGCTGTGGATGTTAGAGAACAGGTTGAGCTCTTGCAAAAGCAATTGAGAAGGACTAGGATGTTTGTTGATGAATTCGACGAGGTGTTGAGGGCGCGGTTCCTTTCGTTTCTTGACGAATTTGAGAACGGGAGGCTTCCGAATCCGAGCGAATTGAGGGAGTTTTTTGTGGATAAGTTGAAGATTCGGAATGCTAAGTGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTATCAATCATGAGGGCGACGTTGAGCCGAACTTAGCAGTGTTAAATGGTTTTGTTGCTTTTACTAGATATAGTAGATTTCTCCTCTTCGGATTTGAGGAAGATGAAGTTGATTCAGGTGCAGGAAACCAGAAGAAGCTGAAGAAGAACTTGATTAGCCAGGAGATTGCTGAGACGCTTTTAACGATTCCGAGGGACTTCTGCTGCCCGATATCACTGGATTTGATGAACGATCCGGTGATCATTTCTACAGGTCAGACATATGACCGCAGTTCGATTACTAGATGGATGGAAGAAGGGCACAGCACTTGCCCAAAGACGGGGCAATTGCTTGTCCATACCCGCCTCGCTCCCAACCGCGCGTTAAGGAATTTGATCATCCAATGGTGCATTGCCCATGGAGTTCCTTATGATCCACCAGAAGGAATGGATGCATCTGCTGAAAGTTATGCAATGGCTTCTCCCACACGTGCTGCGCTCGAAGCCAACAGAGCAACAGCTATAATCCTTATTCAACAGTTATCAATCGGATCGCAAGATGCAAAGTCGATTGCTGCTCGTGAGATTCGTTTGTTGGCCAAAACAGGGAAAGAGAATCGTGCGTTCATTGCAGAAGCCGGTGCGATCCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACACAGTTGCACAGGAGAATTCAGTGACTGCTATGCTTAATCTCTCAATATATGACAAGAACAAGAGTTTGATTATGAGTGAGGTAGGGTGTTTAGGATCGATAACCAAAGTGTTGAGATCTGGACATAGTACAGAAGCACGGGAAAACGCCGCAGCTACGTTGTTCAGCCTCTCTGCAGTTCATGACTACAAGAAGAGAATAGCAGAGGAGAGTGGTGCAGTTGAAGCCTTGGCAGGGTTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGACGCTGTAACAGCTTTGTTTAATCTCTCGACGCATACCGATAACTGCGTTCGGATGATAGAGGCTGGAGCAGTAACAGCGCTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCTGGTGCATTGGCCTTGATTGTTAGACAGCCCGTTGGAGCCGAAGCAGTCGCTAAAGAGGAGAGAGCTGTGGCAGGATTAATAGCAATGATGCGATGTGGTACGCCAAGAGGAAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGAGGCGCTGCCACGACCGAGCAAGTGTTCAAGGCTCCCGCTTTGGCTGGGTTGCTCCAAATGCTCCTATTTACTGGTACCAAGCGAGCAAGAAGAAAGGCTGCTTCGCTAGCTCGAGTGTTCCAAAGATGTGAGCATGTCGTAATGCATGGGGTTGGTTATGCCTATCCAAGTAACTCGGCTTCTAACAGGGACTCCAGCTTTGCTAGCGAGGTATCTGTGCCGATATCCATCTCGGTACCGGTCGTGTAG 2136 47.38 MAAAAIFSSLRRRRSPSLEVFLAPVDLSDVALVRTLAIVATELVSRFSQKSFFFQRRNSRSLIRKLEVCLVFLDCLKDSGATLPHTALLCLKELYLLLYRSKILLDYCSESSKLWMLLQNHSISGHFNDLNLELLTFFDVFPFEEVELAVDVREQVELLQKQLRRTRMFVDEFDEVLRARFLSFLDEFENGRLPNPSELREFFVDKLKIRNAKCCRAEIEFLEEQIINHEGDVEPNLAVLNGFVAFTRYSRFLLFGFEEDEVDSGAGNQKKLKKNLISQEIAETLLTIPRDFCCPISLDLMNDPVIISTGQTYDRSSITRWMEEGHSTCPKTGQLLVHTRLAPNRALRNLIIQWCIAHGVPYDPPEGMDASAESYAMASPTRAALEANRATAIILIQQLSIGSQDAKSIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNTVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITKVLRSGHSTEARENAAATLFSLSAVHDYKKRIAEESGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQMLLFTGTKRARRKAASLARVFQRCEHVVMHGVGYAYPSNSASNRDSSFASEVSVPISISVPVV 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2772873 2775008 + Cp4.1LG20g04650.1 Cpe20g00479 487108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00479 711 Gene3D - 394 667 IPR011989 -
Cpe20g00479 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Cpe20g00479 711 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Cpe20g00479 711 PANTHER U BOX DOMAIN-CONTAINING 11 688 - -
Cpe20g00479 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Cpe20g00479 711 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Cpe20g00479 711 Coils Coil 212 232 - -
Cpe20g00479 711 SMART arm_5 506 546 IPR000225 GO:0005515
Cpe20g00479 711 SMART arm_5 421 461 IPR000225 GO:0005515
Cpe20g00479 711 SMART arm_5 547 585 IPR000225 GO:0005515
Cpe20g00479 711 SMART arm_5 463 504 IPR000225 GO:0005515
Cpe20g00479 711 SMART arm_5 587 627 IPR000225 GO:0005515
Cpe20g00479 711 CDD RING-Ubox_PUB 292 334 IPR045210 -
Cpe20g00479 711 SUPERFAMILY RING/U-box 277 362 - -
Cpe20g00479 711 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Cpe20g00479 711 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 688 - -
Cpe20g00479 711 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Cpe20g00479 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Cpe20g00479 711 SUPERFAMILY ARM repeat 394 669 IPR016024 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00791 Cpe20g00479 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00996 Cpe-Chr10:5674434 Cpe20g00479 Cpe-Chr20:2772873 1.45E-130 dispersed
Cpe13g01060 Cpe-Chr13:8607734 Cpe20g00479 Cpe-Chr20:2772873 5.14E-119 dispersed
Cpe19g00149 Cpe-Chr19:1189891 Cpe20g00479 Cpe-Chr20:2772873 3.57E-118 dispersed
Cpe20g00479 Cpe-Chr20:2772873 Cpe02g01239 Cpe-Chr2:11139117 3.09E-98 dispersed
Cpe20g00479 Cpe-Chr20:2772873 Cpe09g00791 Cpe-Chr9:7325977 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00479 - - csv:101204151 1176.77