Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00480 ATGGATGAAGCTCAGGGAAGCGGCTTGACTTCGTTGCCTCCATTTTTAGTCAAAACATATGATATGGTCGATGATCCTTCAACCAATTCGATTGTTTCATGGAGTTCAAGTGATAAAAGCTTTGTTGTTTGGAAACCACTGGAGTTCTCATCAGTTTTGTTGCCTAAATTCTTTAAGCATAGCAACTTCTCGAGCTTCATCAGGCAGCTCAATACTTATGGGTTCAAGAAGGTGGATCCTGATCAATGGGAATTTGCCAATGATGATTTTGTTAGAGGTGAGCAACACCTGATGAAGAACATCCACAGGAGAAAACCAGTTCATAGTCATTCTTTACAGAACCCCCATGGACAAGGAGTATCTCCTCCGCTAACTGAAGTCGAGAGAAAGAGCTTCGAGGATAACATCGAGACGCTGAAACGGGATAAAGAGCAGCTTGTTCTTGAGTTGCGGAAACACAAACAAGAGTATCAAGGAGTTGTGTTGCAAATGCAGAATTTGAAAGATCGCTTTCAATGTGTTCAACAAGGCATGCAATTATTTATCAGTCTGATCGCTCGTTTTTTGCATAAACCAGGACTTCGCTTGGATCTTCTGCCACAATTGGAAACTTCTGATAGAAAGAGGAGATTGCCTAGAGTTTCTTACAACAATAGTGAAGATAACCTTGAGGATAATCAGATGGGGACAACTCAAACCATTAGTAGAGAAAATATGGATTGTAGTTTTGATCCAATTTTGAAAGAAGAACAGTTTGAACTTCTTGAGACATCCATAGCCTTTTGGGAAGGCATTATCCATAGTTATGGTCAAACAATTAGTCCACTTGATTCCAGCTCAAACCTGGAGTTGGGTGGATCTGTAAGTCATGCCAGTAGCCCTGCTGTAACTTGCAGGCAAGTTAGTGAGGAGCTTCGGTGTAAATCACCAGGAATTGACATGAATTTGGAGCCCATGGCAACCGTTGCTCCTGAATCTGTAGCCTCGAAAGATCAGGCAGCTGGAGTCAAAGCTCCAGTACCAACTGGTGTCAATGATGTTTTCTGGCAGCAATTCTTGACGGAGAATCCTGGTTCATCTGACCCACAAGAAGTTCAATCAGCCAGAAAAGATTCTGATGTCATAATCGAAGAAAACAGACCGAGCGATCAAGGAAATTTTTGGTGGAACACGAGGAGTGTAAATAATGTTGTAGAACAGATAGGGAACCTCGCTCCAGCAGAGAAATTTTCATAG 1236 41.99 MDEAQGSGLTSLPPFLVKTYDMVDDPSTNSIVSWSSSDKSFVVWKPLEFSSVLLPKFFKHSNFSSFIRQLNTYGFKKVDPDQWEFANDDFVRGEQHLMKNIHRRKPVHSHSLQNPHGQGVSPPLTEVERKSFEDNIETLKRDKEQLVLELRKHKQEYQGVVLQMQNLKDRFQCVQQGMQLFISLIARFLHKPGLRLDLLPQLETSDRKRRLPRVSYNNSEDNLEDNQMGTTQTISRENMDCSFDPILKEEQFELLETSIAFWEGIIHSYGQTISPLDSSSNLELGGSVSHASSPAVTCRQVSEELRCKSPGIDMNLEPMATVAPESVASKDQAAGVKAPVPTGVNDVFWQQFLTENPGSSDPQEVQSARKDSDVIIEENRPSDQGNFWWNTRSVNNVVEQIGNLAPAEKFS 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2777680 2779992 - Cp4.1LG20g04750.1 Cpe20g00480 487109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00480 411 Gene3D - 9 105 IPR036388 -
Cpe20g00480 411 MobiDBLite consensus disorder prediction 355 382 - -
Cpe20g00480 411 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cpe20g00480 411 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cpe20g00480 411 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 391 - -
Cpe20g00480 411 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 391 IPR027725 -
Cpe20g00480 411 Coils Coil 129 170 - -
Cpe20g00480 411 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cpe20g00480 411 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cpe20g00480 411 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cpe20g00480 411 SUPERFAMILY Winged helix DNA-binding domain 11 104 IPR036390 -
Cpe20g00480 411 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00480 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101204390 706.827
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe19g01087 Cpe20g00480 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00480 Cpe-Chr20:2777680 Cpe08g00869 Cpe-Chr8:6864133 9.07E-59 dispersed
Cpe05g01537 Cpe-Chr5:10577552 Cpe20g00480 Cpe-Chr20:2777680 3.85E-65 transposed
Cpe19g01087 Cpe-Chr19:7392292 Cpe20g00480 Cpe-Chr20:2777680 2.43E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g260 Blo01g00868 Blo11g00264 . . . . Bma14g00978 Bma01g01469 Cmo13g00611 . . Cma07g00159 . Car07g00139 . . . . . . . . . . Cla01g02342 Cam01g2455 Cec04g2104 Cco04g2180 Clacu01g2475 Cmu01g2342 Cre04g2010 . Cone5ag1639 . . Lsi01g00219 Csa06g03726 Chy12g00055 Cme08g00202 . . . Bda07g00962 . . . . Sed08g2732 . Cmo07g00157 Cma13g00581 . Car13g00464 . Cpe19g01087 Cpe20g00480 Bhi08g02149 Tan05g2532 Cmetu12g1147 Lac10g0985 Hepe07g1835 . . Cla03g00695 Cam03g0699 Cec03g0671 Cco03g0708 Clacu03g0743 Cmu03g1335 Cre03g0980 Lsi02g00833 Csa01g02297 Chy02g00208 Cme12g01263
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe12g01046 . 27 250 HSF AT4G17750 53.5 3.1e-61 233.4
Cpe11g00071 . 18 243 HSF AT4G17750 51.4 3.7e-59 226.5
Cpe03g01464 . 53 258 HSF AT4G17750 55.8 4.1e-58 223.0
Cpe15g00018 . 166 395 HSF AT4G17750 50.4 5.4e-58 222.6
Cpe20g00480 CST 13 192 HSF AT4G17750 50.3 5.8e-44 176.0
Cpe05g01537 . 12 110 HSF AT4G17750 71.7 2.3e-40 164.1
Cpe11g00146 CCT,CST 20 118 HSF AT4G17750 71.7 7.3e-39 159.1
Cpe02g00187 CCT,CST 20 118 HSF AT4G17750 69.7 3.6e-38 156.8
Cpe06g00166 CCT 21 118 HSF AT4G17750 69.4 1.4e-37 154.8
Cpe12g01046 . 63 250 HSF AT5G16820 61.3 1.2e-59 228.0
Cpe15g00018 . 167 374 HSF AT5G16820 54.2 4.0e-58 223.0
Cpe07g00562 . 41 224 HSF AT5G16820 57.3 3.8e-56 216.5
Cpe03g01464 . 77 281 HSF AT5G16820 53.3 7.1e-55 212.2
Cpe11g00071 . 43 227 HSF AT5G16820 55.2 1.2e-54 211.5
Cpe19g01087 CST 10 192 HSF AT5G16820 51.9 5.6e-44 176.0
Cpe05g01537 . 13 112 HSF AT5G16820 78.0 8.4e-40 162.2
Cpe08g00869 . 13 516 HSF AT1G32330 52.1 2.7e-115 412.9
Cpe12g01046 . 51 250 HSF AT1G32330 55.8 1.5e-60 231.1
Cpe07g00562 . 1 221 HSF AT1G32330 50.2 3.0e-53 206.8
Cpe05g01537 . 11 106 HSF AT1G32330 76.0 2.2e-40 164.1
Cpe11g00146 CCT,CST 20 117 HSF AT1G32330 71.4 4.6e-38 156.4
Cpe02g00187 CCT,CST 22 117 HSF AT1G32330 71.9 1.8e-37 154.5
Cpe12g01046 . 63 250 HSF AT3G02990 62.1 1.2e-59 228.0
Cpe15g00018 . 167 390 HSF AT3G02990 50.9 7.9e-59 225.3
Cpe03g01464 . 77 280 HSF AT3G02990 54.3 3.0e-58 223.4
Cpe11g00071 . 43 243 HSF AT3G02990 52.7 3.7e-56 216.5
Cpe07g00562 . 41 217 HSF AT3G02990 56.0 1.5e-54 211.1
Cpe05g01537 . 13 106 HSF AT3G02990 77.7 8.2e-40 162.2
Cpe12g01046 . 51 246 HSF AT2G26150 61.2 5.4e-65 245.4
Cpe03g01464 . 65 277 HSF AT2G26150 54.4 3.0e-63 239.6
Cpe08g00869 . 8 243 HSF AT2G26150 56.1 2.8e-61 233.0
Cpe15g00018 . 150 359 HSF AT2G26150 50.7 4.4e-59 225.7
Cpe05g01537 . 2 111 HSF AT4G18880 67.3 4.4e-42 169.5
Cpe06g00166 CCT 24 128 HSF AT4G18880 62.4 2.1e-36 150.6
Cpe08g00417 CST 4 467 HSF AT4G13980 51.2 8.2e-117 417.9
Cpe03g01613 CST 6 445 HSF AT4G13980 52.8 6.5e-114 408.3
Cpe05g01537 . 4 111 HSF AT4G13980 65.7 2.6e-38 157.1
Cpe03g01464 . 65 257 HSF AT5G43840 53.4 1.7e-53 206.8
Cpe12g01046 . 51 247 HSF AT5G43840 51.8 1.3e-51 200.7
Cpe07g00562 . 29 220 HSF AT5G43840 53.1 3.8e-48 189.1
Cpe15g00018 . 155 470 HSF AT3G22830 52.2 4.1e-88 322.4
Cpe03g01464 . 38 286 HSF AT3G22830 58.2 5.7e-82 302.0
Cpe11g00071 . 31 241 HSF AT3G22830 55.9 4.9e-65 245.7
Cpe08g00869 . 9 242 HSF AT3G22830 55.1 6.6e-62 235.3
Cpe05g01537 . 5 105 HSF AT3G22830 69.3 4.3e-37 152.9
Cpe03g01464 . 63 277 HSF AT3G51910 57.9 5.2e-63 238.4
Cpe07g00562 . 29 249 HSF AT3G51910 51.3 9.9e-54 207.6
Cpe11g00071 . 31 248 HSF AT3G51910 51.8 9.9e-54 207.6
Cpe03g01464 . 63 266 HSF AT3G63350 52.6 2.5e-52 203.0
Cpe11g00071 . 20 231 HSF AT3G63350 50.9 6.2e-51 198.4
Cpe07g00562 . 18 228 HSF AT3G63350 50.9 2.6e-49 193.0
Cpe12g01046 . 64 252 HSF AT1G67970 51.1 1.0e-45 181.4
Cpe10g00435 CCT 2 302 HSF AT4G36990 51.7 1.1e-68 257.3
Cpe11g00146 CCT,CST 17 115 HSF AT5G62020 66.7 2.9e-38 156.4
Cpe05g00312 . 16 287 HSF AT4G11660 53.7 1.8e-74 276.9
Cpe13g00172 CCT,CST 16 343 HSF AT4G11660 51.3 2.2e-72 270.0
Cpe02g00187 CCT,CST 16 119 HSF AT4G11660 74.0 8.9e-45 178.3
Cpe06g00166 CCT 16 121 HSF AT4G11660 72.6 1.5e-44 177.6
Cpe11g00146 CCT,CST 16 121 HSF AT4G11660 71.7 2.0e-44 177.2
Cpe10g00435 CCT 2 108 HSF AT4G11660 71.0 4.1e-42 169.5
Cpe19g00618 CCT 5 102 HSF AT4G11660 69.4 2.8e-38 156.8
Cpe14g00974 . 82 175 HSF AT4G11660 69.1 1.5e-36 151.0
Cpe18g00201 CCT 27 126 HSF AT4G11660 65.0 2.0e-36 150.6
Cpe10g01200 . 16 217 HSF AT2G41690 54.9 4.9e-52 201.8
Cpe02g00187 CCT,CST 1 335 HSF AT1G46264 52.6 9.3e-89 324.3
Cpe11g00146 CCT,CST 19 374 HSF AT1G46264 54.2 2.1e-88 323.2
Cpe06g00166 CCT 1 330 HSF AT1G46264 52.2 9.6e-86 314.3
Cpe04g00882 CCT 1 186 HSF AT1G46264 51.8 4.3e-54 209.1
Cpe18g00201 CCT 30 208 HSF AT1G46264 52.2 6.3e-53 205.3
Cpe10g00435 CCT 4 198 HSF AT1G46264 50.2 9.4e-49 191.4
Cpe08g00869 . 33 138 HSF AT1G46264 72.6 1.2e-40 164.5
Cpe14g00974 . 82 175 HSF AT1G46264 77.7 3.6e-40 162.9
Cpe05g01537 . 5 105 HSF AT1G46264 68.3 6.3e-37 152.1
Cpe03g01613 CST 6 103 HSF AT1G46264 69.4 2.4e-36 150.2
Cpe12g01046 . 54 172 HSF AT1G46264 56.9 2.4e-36 150.2
Cpe04g01133 CCT,CST 11 178 HSF AT3G24520 67.3 1.4e-62 237.3
Cpe11g01109 CCT 11 181 HSF AT3G24520 64.3 1.3e-60 230.7
Cpe12g01046 . 27 250 HSF AT4G17750 53.5 3.1e-61 233.4
Cpe11g00071 . 18 243 HSF AT4G17750 51.4 3.7e-59 226.5
Cpe03g01464 . 53 258 HSF AT4G17750 55.8 4.1e-58 223.0
Cpe15g00018 . 166 395 HSF AT4G17750 50.4 5.4e-58 222.6
Cpe20g00480 CST 13 192 HSF AT4G17750 50.3 5.8e-44 176.0
Cpe05g01537 . 12 110 HSF AT4G17750 71.7 2.3e-40 164.1
Cpe11g00146 CCT,CST 20 118 HSF AT4G17750 71.7 7.3e-39 159.1
Cpe02g00187 CCT,CST 20 118 HSF AT4G17750 69.7 3.6e-38 156.8
Cpe06g00166 CCT 21 118 HSF AT4G17750 69.4 1.4e-37 154.8
Cpe12g01046 . 63 250 HSF AT5G16820 61.3 1.2e-59 228.0
Cpe15g00018 . 167 374 HSF AT5G16820 54.2 4.0e-58 223.0
Cpe07g00562 . 41 224 HSF AT5G16820 57.3 3.8e-56 216.5
Cpe03g01464 . 77 281 HSF AT5G16820 53.3 7.1e-55 212.2
Cpe11g00071 . 43 227 HSF AT5G16820 55.2 1.2e-54 211.5
Cpe19g01087 CST 10 192 HSF AT5G16820 51.9 5.6e-44 176.0
Cpe05g01537 . 13 112 HSF AT5G16820 78.0 8.4e-40 162.2
Cpe08g00869 . 13 516 HSF AT1G32330 52.1 2.7e-115 412.9
Cpe12g01046 . 51 250 HSF AT1G32330 55.8 1.5e-60 231.1
Cpe07g00562 . 1 221 HSF AT1G32330 50.2 3.0e-53 206.8
Cpe05g01537 . 11 106 HSF AT1G32330 76.0 2.2e-40 164.1
Cpe11g00146 CCT,CST 20 117 HSF AT1G32330 71.4 4.6e-38 156.4
Cpe02g00187 CCT,CST 22 117 HSF AT1G32330 71.9 1.8e-37 154.5
Cpe12g01046 . 63 250 HSF AT3G02990 62.1 1.2e-59 228.0
Cpe15g00018 . 167 390 HSF AT3G02990 50.9 7.9e-59 225.3
Cpe03g01464 . 77 280 HSF AT3G02990 54.3 3.0e-58 223.4
Cpe11g00071 . 43 243 HSF AT3G02990 52.7 3.7e-56 216.5
Cpe07g00562 . 41 217 HSF AT3G02990 56.0 1.5e-54 211.1
Cpe05g01537 . 13 106 HSF AT3G02990 77.7 8.2e-40 162.2
Cpe12g01046 . 51 246 HSF AT2G26150 61.2 5.4e-65 245.4
Cpe03g01464 . 65 277 HSF AT2G26150 54.4 3.0e-63 239.6
Cpe08g00869 . 8 243 HSF AT2G26150 56.1 2.8e-61 233.0
Cpe15g00018 . 150 359 HSF AT2G26150 50.7 4.4e-59 225.7
Cpe05g01537 . 2 111 HSF AT4G18880 67.3 4.4e-42 169.5
Cpe06g00166 CCT 24 128 HSF AT4G18880 62.4 2.1e-36 150.6
Cpe08g00417 CST 4 467 HSF AT4G13980 51.2 8.2e-117 417.9
Cpe03g01613 CST 6 445 HSF AT4G13980 52.8 6.5e-114 408.3
Cpe05g01537 . 4 111 HSF AT4G13980 65.7 2.6e-38 157.1
Cpe03g01464 . 65 257 HSF AT5G43840 53.4 1.7e-53 206.8
Cpe12g01046 . 51 247 HSF AT5G43840 51.8 1.3e-51 200.7
Cpe07g00562 . 29 220 HSF AT5G43840 53.1 3.8e-48 189.1
Cpe15g00018 . 155 470 HSF AT3G22830 52.2 4.1e-88 322.4
Cpe03g01464 . 38 286 HSF AT3G22830 58.2 5.7e-82 302.0
Cpe11g00071 . 31 241 HSF AT3G22830 55.9 4.9e-65 245.7
Cpe08g00869 . 9 242 HSF AT3G22830 55.1 6.6e-62 235.3
Cpe05g01537 . 5 105 HSF AT3G22830 69.3 4.3e-37 152.9
Cpe03g01464 . 63 277 HSF AT3G51910 57.9 5.2e-63 238.4
Cpe07g00562 . 29 249 HSF AT3G51910 51.3 9.9e-54 207.6
Cpe11g00071 . 31 248 HSF AT3G51910 51.8 9.9e-54 207.6
Cpe03g01464 . 63 266 HSF AT3G63350 52.6 2.5e-52 203.0
Cpe11g00071 . 20 231 HSF AT3G63350 50.9 6.2e-51 198.4
Cpe07g00562 . 18 228 HSF AT3G63350 50.9 2.6e-49 193.0
Cpe12g01046 . 64 252 HSF AT1G67970 51.1 1.0e-45 181.4
Cpe10g00435 CCT 2 302 HSF AT4G36990 51.7 1.1e-68 257.3
Cpe11g00146 CCT,CST 17 115 HSF AT5G62020 66.7 2.9e-38 156.4
Cpe05g00312 . 16 287 HSF AT4G11660 53.7 1.8e-74 276.9
Cpe13g00172 CCT,CST 16 343 HSF AT4G11660 51.3 2.2e-72 270.0
Cpe02g00187 CCT,CST 16 119 HSF AT4G11660 74.0 8.9e-45 178.3
Cpe06g00166 CCT 16 121 HSF AT4G11660 72.6 1.5e-44 177.6
Cpe11g00146 CCT,CST 16 121 HSF AT4G11660 71.7 2.0e-44 177.2
Cpe10g00435 CCT 2 108 HSF AT4G11660 71.0 4.1e-42 169.5
Cpe19g00618 CCT 5 102 HSF AT4G11660 69.4 2.8e-38 156.8
Cpe14g00974 . 82 175 HSF AT4G11660 69.1 1.5e-36 151.0
Cpe18g00201 CCT 27 126 HSF AT4G11660 65.0 2.0e-36 150.6
Cpe10g01200 . 16 217 HSF AT2G41690 54.9 4.9e-52 201.8
Cpe02g00187 CCT,CST 1 335 HSF AT1G46264 52.6 9.3e-89 324.3
Cpe11g00146 CCT,CST 19 374 HSF AT1G46264 54.2 2.1e-88 323.2
Cpe06g00166 CCT 1 330 HSF AT1G46264 52.2 9.6e-86 314.3
Cpe04g00882 CCT 1 186 HSF AT1G46264 51.8 4.3e-54 209.1
Cpe18g00201 CCT 30 208 HSF AT1G46264 52.2 6.3e-53 205.3
Cpe10g00435 CCT 4 198 HSF AT1G46264 50.2 9.4e-49 191.4
Cpe08g00869 . 33 138 HSF AT1G46264 72.6 1.2e-40 164.5
Cpe14g00974 . 82 175 HSF AT1G46264 77.7 3.6e-40 162.9
Cpe05g01537 . 5 105 HSF AT1G46264 68.3 6.3e-37 152.1
Cpe03g01613 CST 6 103 HSF AT1G46264 69.4 2.4e-36 150.2
Cpe12g01046 . 54 172 HSF AT1G46264 56.9 2.4e-36 150.2
Cpe04g01133 CCT,CST 11 178 HSF AT3G24520 67.3 1.4e-62 237.3
Cpe11g01109 CCT 11 181 HSF AT3G24520 64.3 1.3e-60 230.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001764 2 9 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 5 4 2 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51132 PF00447 HSF_DNA-bind 3.10E-30 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00480 Cpe_Chr20 FPKM 16.29179 19.92531 31.078634 29.51655 22.936846 25.954666 26.197615 49.107628 47.630291 47.463928