Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00481 ATGACATCGGGGACGAGAATGCCCACTTGGAAGGAGAGGGAGAACAACAAGCGCCGTGAGAGGCGCCGACGTGCCATCGCCGCTAAGATCTTTCTTGGCCTGCGAATGTACGGAAACTATAAGCTTCCTAAGCACTGCGATAATAATGAGGTCCTCAAAGCCCTCTGTGTTGAAGCTGGGTGGACTGTAGAGGAAGACGGCACTACCTATCGGAAGGGATGCAAGCCTGTGGAACGCGATATCATGGGCGGATCAGCTTCTGCAAGTCCATGTTCATCTTACCAGCCGAGCCCATGTGCATCTTATAACCCAAGTCCTGCGTCTTCTTCCTTCCCAAGCCCTTCCCGTTACGCCATTAAAGGCAATGACAATGCTGCTGATCCCAATTCCCTCATCCCATGGCTGAAGAACCTCTCCTCAGCTTCATCACCAGCCTCCTCCAGGCTGCCTCACCATCTTTATATTACTGGTGGCTCCATAAGTGCACCTGTTACCCCTCCGTCGAGCTCCCCAACTGCTCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCAGCAGTTGCTCCTGCTTGGGCAGCACAGCGCTTCTCATGTTTGCCTGCATCGACCCCTCCGAGCCCTGGGCGTCAGGTGTTGGCTGATTCAGCATGGTTTGATAGTATGCGGATTCCTCAAAGTGGACCATCGTCACCAACCTTCAGCCTTGTGGCTAGGAATCCTTTTGGATTTAAGGAGGCAATGTCTGCTGGAGGTCCTTCATTCGGATTTAAGGAGGCAATGTCAAATCCAATGTCTGCTGGAGGGTCTCGTAATTGGACTCCTACACAGAGCGGGACGTGCTCGCCCACGGTTGCTGCGGGCACCGATCATACTTCAGATGTTCCTATGACGGATGGGACTGCAGCGGAGTTTGCCTTCGGAAGTTGTTCGATTGGGTTGGTGAAGCCTTGGGAAGGAGAGAGAATTCATGAGGAATGCATCTCTGATGATCTCGAACTTACACTTGGGAATTCAAGGACGAGGTGA 1029 52.38 MTSGTRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCVEAGWTVEEDGTTYRKGCKPVERDIMGGSASASPCSSYQPSPCASYNPSPASSSFPSPSRYAIKGNDNAADPNSLIPWLKNLSSASSPASSRLPHHLYITGGSISAPVTPPSSSPTARTPRKPNDWDNHPAVAPAWAAQRFSCLPASTPPSPGRQVLADSAWFDSMRIPQSGPSSPTFSLVARNPFGFKEAMSAGGPSFGFKEAMSNPMSAGGSRNWTPTQSGTCSPTVAAGTDHTSDVPMTDGTAAEFAFGSCSIGLVKPWEGERIHEECISDDLELTLGNSRTR 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2783513 2787594 + Cp4.1LG20g04850.1 Cpe20g00481 487110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00481 342 MobiDBLite consensus disorder prediction 158 186 - -
Cpe20g00481 342 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Cpe20g00481 342 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 342 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cpe20g00481 342 MobiDBLite consensus disorder prediction 1 21 - -
Cpe20g00481 342 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00481 - - - csv:101204637 535.028
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00790 Cpe20g00481 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00599 Cpe-Chr1:3456674 Cpe20g00481 Cpe-Chr20:2783513 2.71E-136 dispersed
Cpe07g00438 Cpe-Chr7:2812803 Cpe20g00481 Cpe-Chr20:2783513 7.82E-41 dispersed
Cpe11g00187 Cpe-Chr11:1017927 Cpe20g00481 Cpe-Chr20:2783513 4.85E-38 dispersed
Cpe14g00363 Cpe-Chr14:2208805 Cpe20g00481 Cpe-Chr20:2783513 4.35E-126 dispersed
Cpe19g00793 Cpe-Chr19:5997709 Cpe20g00481 Cpe-Chr20:2783513 5.01E-49 dispersed
Cpe20g00481 Cpe-Chr20:2783513 Cpe01g00537 Cpe-Chr1:3085495 5.20E-15 dispersed
Cpe20g00481 Cpe-Chr20:2783513 Cpe09g00790 Cpe-Chr9:7311979 9.06E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g261 Blo01g00870 Blo11g00263 . . . . Bma14g00977 . Cmo13g00609 Cmo18g00412 . . . . . Cpe09g00790 . . . . . . . . . . . . . . . . . Cone6ag0940 Cone9ag0944 . . Chy12g00053 . . . . Bda07g00961 . . . . Sed08g2730 . . Cma13g00580 Cma18g00433 Car13g00463 Car18g00409 . Cpe20g00481 Bhi08g02145 Tan05g2533 Cmetu12g0459 Lac10g0987 Hepe07g1834 . . Cla03g00693 Cam03g0700 Cec03g0673 Cco03g0709 Clacu03g0742 Cmu03g1334 Cre03g0981 Lsi02g00836 Csa01g02293 . Cme12g01261
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00438 CCT 1 306 BZR Transcription Factor Family AT1G75080 59.5 4.7e-82 302.0
Cpe11g00187 CCT 49 314 BZR Transcription Factor Family AT1G75080 61.2 2.9e-79 292.7
Cpe10g00589 . 28 318 BZR Transcription Factor Family AT1G75080 58.1 3.2e-78 289.3
Cpe19g00793 . 33 323 BZR Transcription Factor Family AT1G75080 58.3 3.2e-78 289.3
Cpe07g00438 CCT 1 306 BZR Transcription Factor Family AT1G19350 57.6 7.6e-80 294.7
Cpe11g00187 CCT 49 315 BZR Transcription Factor Family AT1G19350 61.0 2.9e-79 292.7
Cpe10g00589 . 28 317 BZR Transcription Factor Family AT1G19350 58.9 9.2e-78 287.7
Cpe19g00793 . 33 321 BZR Transcription Factor Family AT1G19350 59.3 1.2e-77 287.3
Cpe10g00589 . 6 313 BZR Transcription Factor Family AT3G50750 58.0 8.4e-77 284.3
Cpe19g00793 . 10 323 BZR Transcription Factor Family AT3G50750 56.3 5.5e-76 281.6
Cpe11g00187 CCT 17 309 BZR Transcription Factor Family AT3G50750 50.2 3.3e-57 219.2
Cpe01g00599 CST 77 326 BZR Transcription Factor Family AT4G18890 54.2 1.5e-49 193.4
Cpe09g00790 CCT 80 326 BZR Transcription Factor Family AT4G18890 51.2 1.2e-48 190.3
Cpe14g00363 . 77 323 BZR Transcription Factor Family AT4G18890 50.6 1.9e-44 176.4
Cpe01g00599 CST 1 326 BZR Transcription Factor Family AT1G78700 72.2 1.5e-117 419.9
Cpe14g00363 . 1 323 BZR Transcription Factor Family AT1G78700 69.9 5.8e-109 391.3
Cpe20g00481 CCT 1 342 BZR Transcription Factor Family AT1G78700 65.8 4.3e-104 375.2
Cpe09g00790 CCT 1 326 BZR Transcription Factor Family AT1G78700 69.2 2.8e-103 372.5
Cpe10g00589 . 28 200 BZR Transcription Factor Family AT4G36780 78.5 1.0e-63 240.7
Cpe19g00793 . 33 204 BZR Transcription Factor Family AT4G36780 75.7 2.4e-60 229.6
Cpe11g00187 CCT 49 213 BZR Transcription Factor Family AT4G36780 57.6 2.5e-38 156.4
Cpe07g00438 CCT 33 204 BZR Transcription Factor Family AT4G36780 56.7 1.6e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51133 PF05687 BES1_N 5.90E-65 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00481 Cpe_Chr20 FPKM 4.060083 4.350903 6.181816 6.748055 4.165431 6.692252 4.300176 8.183618 7.217362 7.034153