Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00485 ATGGGTTACCCAGATGAGATGCAGAAGCAGAAGCAGAAGCAGAAGCAGGCAGGTGAAGAACAGTCCCAACGGCGAAGAAGTGGTCGAGGGAAGATTGAAATCAAGAGAATTGAAAACACAACAAATCGCCAAGTTACTTTCTGTAAACGCAGAAATGGTTTGCTTAAGAAGGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTCGCTCTTATTGTCTTCTCCACCCGTGGTCGCCTCTATGAATACGCCAACAACAGTGTTAGGGCTACGATTTCGAGGTACAAAAAGGCATGCTCGGATCCCTTAAGCGCCGGGTTCGTTTCGGAAGCCAACACACAGTTCTACGAGCAAGAATCCGCGAAATTGCGAGCCCAAATCGGGAATATGCAAAACCTAAACAGGCATTTGTTGGGGGAATCCATCGGTTCGTTGTCGGTGAAAGATCTGAAAAGCCTGCAGGAAATTGAACTGCACAACACCAACCAGCTGATACGAGCAAAGATAGCGGAGACGGAAAGAAGACAACAAAACAGAAGTGGAAATAACAGCATAGGTGCAAGAGGAGGAGGAGAAGGAGAAGGAGAAGGATGTGTGGGTCCAAATTTAGAGGGTAATGAGCAATATTACTTTCCCCATCAAAATCACCATATCTCCCTGCAACTCATCTAA 672 46.28 MGYPDEMQKQKQKQKQAGEEQSQRRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPLSAGFVSEANTQFYEQESAKLRAQIGNMQNLNRHLLGESIGSLSVKDLKSLQEIELHNTNQLIRAKIAETERRQQNRSGNNSIGARGGGEGEGEGCVGPNLEGNEQYYFPHQNHHISLQLI 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2812620 2815948 + Cp4.1LG20g04840.1 Cpe20g00485 487114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00485 223 MobiDBLite consensus disorder prediction 1 35 - -
Cpe20g00485 223 PRINTS MADS domain signature 29 49 IPR002100 GO:0003677|GO:0046983
Cpe20g00485 223 PRINTS MADS domain signature 49 64 IPR002100 GO:0003677|GO:0046983
Cpe20g00485 223 PRINTS MADS domain signature 64 85 IPR002100 GO:0003677|GO:0046983
Cpe20g00485 223 ProSitePatterns MADS-box domain signature. 29 83 IPR002100 GO:0003677|GO:0046983
Cpe20g00485 223 Gene3D - 39 104 IPR036879 GO:0003677|GO:0046983
Cpe20g00485 223 SUPERFAMILY SRF-like 28 102 IPR036879 GO:0003677|GO:0046983
Cpe20g00485 223 SMART madsneu2 27 86 IPR002100 GO:0003677|GO:0046983
Cpe20g00485 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 27 154 - -
Cpe20g00485 223 MobiDBLite consensus disorder prediction 8 35 - -
Cpe20g00485 223 MobiDBLite consensus disorder prediction 171 200 - -
Cpe20g00485 223 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 27 154 - -
Cpe20g00485 223 Pfam K-box region 112 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe20g00485 223 CDD MADS_MEF2_like 28 104 IPR033896 GO:0000977|GO:0045944
Cpe20g00485 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 36 83 IPR002100 GO:0003677|GO:0046983
Cpe20g00485 223 ProSiteProfiles MADS-box domain profile. 27 87 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00122 Cpe20g00485 CCT
Cpe19g01096 Cpe20g00485 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00485 Cpe-Chr20:2812620 Cpe17g00325 Cpe-Chr17:2207273 1.55E-41 dispersed
Cpe10g00122 Cpe-Chr10:785283 Cpe20g00485 Cpe-Chr20:2812620 2.97E-81 wgd
Cpe16g00732 Cpe-Chr16:7416046 Cpe20g00485 Cpe-Chr20:2812620 5.55E-43 wgd
Cpe19g01096 Cpe-Chr19:7418452 Cpe20g00485 Cpe-Chr20:2812620 5.33E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51134 PF01486 K-box 6.70E-10 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00485 K09264 - csv:101205366 274.248