Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00493 ATGGAGAATAGTCGGGGAGGAGGAAGAGGAATGGCGGCGTTTTCGTCCTCGGCGGAAAGCAATACCAGGGCTCGTCCGAGCAACACCGCTAGCACCGACAACAGAGCTGCGGCACTTGTGCAATACAATGCTGATGCTGGGCTTTTGAACAAGTTTGAGCAATCGGATGCCTCTGGTGAGTCTTTTAACTATTCGAGATCAGTTCTTGAAGCTCCACAGTCTGTACCTGAAGAACAAATTACTGCTTATCTGTCTAAGATTCAGAGGGGTGGAATGGTTCAACCGTTTGGTTGTTTGCTTGCGATTGAAGAATCTAGTCTTAAGATTATTAGCTATAGTGAGAATTGTTTTGAATTATTGGGGATAAATTATCAGTTTGAGTCGGCACCGGGGAAGGGTCTAATTGGGGTTCATATAAGAGCTCTGTTTACGCCTTCCTCCGGTGCTTCTTTGGCTAAAGCGGCTTCATCCAGGGAGATTTCGTTGTTGAATCCTGTTTGGGTTTATTCTAGGAATACCCAGAAGCCATTTTATGCCATATTGCATAGGATTGATGTGGGGATTGTAATTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCACTGTCGCTTGCCGGCGCCGTGCATTCACAGAAACTTGCGGTTCGAGCCATTTCCAGGTTGCAGGCTCTACCTGGTGGTGATATTGGTGTTTTATGTGATACGGTTGTGGAGGATGTTCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCGGACTTGGAGCCATATCTCGGTTTGCACTATCCTGCCATTGATATACCCCAAGCTGCTCGTTTCTTGTTCAAGCAGAACCGCGTTAGGATGATTTGCGATTGCCACGCGAAGCCTGTGCAGGTCATTCAAAGTGATGAGCTAAAGCAGCCTCTTTGTTTGGTTAATTCAACACTTCGATCACCACATAGTTGTCATTTGCAGTACATGGCAAATATGGGTTCCATAGCCTCATTGGCAATGGCAGTAATCATGAACAGTGATGACTCTCCAACAAGGTTATGGGGCCTGGTAGTGTGCCACCATACTTCAGCACGATATGTCCCTTTCCCACTTCGTTATGCTTGCGAGTTTCTCATGCAGGCTTTCGGGCTGCAACTTTACATGGAGCTTCAATTGGCATTACAAATAACAGAGAAAAAGGTTCTCAAGACACAAACCTTACTCTGTGACATGCTCCTCCGAGGCTCCCCTTATGCATTGCTGACCCAGTCACCTAGTATAAAGGATCTCGTGAAGTGTGATGGAGCTGCATTGTACTATCAGGGGGCATGTTGTCTACTAGGTGTAACTCCAACTGAAGCCCAAGTTAAAAACCTTGTCGAGTGGATACTCAATAACCATGGAGATTCTACAGGACTGAGCACGGATAGCTTGGCTGATGCTGGCTATCCCGAAGCTGCTTCACTAGGTGATGCAATATGTGGAATGACTGCTGCAAGAATTAGTTCAAAAGATTTCTTATTCTGGTTCCGTTCCCATGCCGCAAAAGAAATCCAATGGGGAGGAGCCAAGCATCATCCAGATGATAAGGATGATGGTGGAAGAATGCACCCAAGGTCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAAAAGTATGTCATGGGAAGCTCAAGAAATAAATGCCATTCACTCATTGCAGCTTATTATGAGGGAGTCTTTCTCGAGCGCTAGGGACAGTGATTCGAAGGCAGAAATGTCTGTCCAGCAGAGTGATACTGTGTCTCAGGACATCGGCGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGATTGATTGAAACAGCAACCGCTCCAATTTTTGGGGTTGACTCAACTGGTGTGATCAATGGATGGAATGCTAAAATAGCTGAACTCGTAGGATTACAAACTGGAGAAGCTTTGGGGAGATCTCTTGATGAAATCGTTCATGATGATTCACGTGGAACTGTTGGAAATTTAGTTCTTCATGCTCTGCAAGGTGTGGAAGACAAAAATGTGGAGTTAAAACTGAGAAAGTTTGGAACTGATAAAGAAAACTCAGCTGTGTATATTGTAGTTAATGCTTGCGCAAGTAGGGATTACACAAATAAAGTTATTGGGGTTTGCTTTGTTGGGCAAGATATAACGTCGGAGAAGGGCATGAGGGATAGATTTATCCGTCTGCAGGGAGATTATAGGACAATCATTGAAAGTCTGAGTCCATTGATTCCACCAATTTTCGTTTCCGACGAGAATGGTTACTGCTGTGAATGGACTGCTGCCATGGAGAAGCTTTCTGGTTGGAGTAAAGATGAAGTTATAGGGAAAATGCTTGTAGGGGAGATTTTTGGGAACTTCTGTAGGTTGAAAGATCTAGATACCCTCACTAGGTTTATGATCCTATTATATCAAGGCATTGGTGGTGAACAAACTGAGAAGTTTCCATTAGGATTTTTCAATAAGAATGGTGACTATGTGGAGGTGCTTTTAACATCAAACAAAAGGACTGATGCAGAAGGAAATGTCATTGGTTGTATCTGTTTCCTGCAAGTTGTTGAGCCAAACTTGCAAGGGGTCTCTGAAGGACTCGGCCTGGGCGAAAGACGGGGCAATTTGCAGCTTAAGGAGTTGACTTACTTAAAGCGGGAGATGAAAAATCCTTTAAATGGCATCAAATTTACTCATGAACTCCTTGTAAATTCTGGCATTACAGACAACCAGAAACTCTTCCTTGTTACTAGCGATGCGTGCGAGAGACAGATCATGGCAATCATTGAGGATATGGACTTCAGAAGTTTAGAAGTGGGCCAAGTACAGATAAACAGAGACGAGTTTGTCCTCGGGAGTGTTCTGGATGCCATTATCTGTCAAATCATGATTGTTGTCAGAGAGAAGAACATACAACTGTTTCATGAAATTCCAGAAGAAATTAAAGTGTTAACTCTTTGTGGCGATCAAATTAAACTTCAGCTGGTTTTATCAGATTTCTTACTTAGCGTAGTGCAGAACACGCCTGCTCTGGACGGTTGGGTTGAAATCAAAATTTCAGCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGGCTGCCTCCTGAACTAATCCAAGATATGGTTGGAGGAGGACAACAGTGGAGTTCAGAGCAAGGCCTCGCCCTAAATCTGTCACGCAGACTTCTCAATAAATTAAACGGTAATGCCTGCTATGTTAGAGAGCAAACTAAATGCTACTTCCTCATTGATCTCGAACTCAAGTTAAGGCGCTCGAGGGGGTCGCTGGAAGGCACTACAAGCCAAAGGACTTGA 3390 43.86 MENSRGGGRGMAAFSSSAESNTRARPSNTASTDNRAAALVQYNADAGLLNKFEQSDASGESFNYSRSVLEAPQSVPEEQITAYLSKIQRGGMVQPFGCLLAIEESSLKIISYSENCFELLGINYQFESAPGKGLIGVHIRALFTPSSGASLAKAASSREISLLNPVWVYSRNTQKPFYAILHRIDVGIVIDLEPARSVDPALSLAGAVHSQKLAVRAISRLQALPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRMICDCHAKPVQVIQSDELKQPLCLVNSTLRSPHSCHLQYMANMGSIASLAMAVIMNSDDSPTRLWGLVVCHHTSARYVPFPLRYACEFLMQAFGLQLYMELQLALQITEKKVLKTQTLLCDMLLRGSPYALLTQSPSIKDLVKCDGAALYYQGACCLLGVTPTEAQVKNLVEWILNNHGDSTGLSTDSLADAGYPEAASLGDAICGMTAARISSKDFLFWFRSHAAKEIQWGGAKHHPDDKDDGGRMHPRSSFKAFLEVAKSKSMSWEAQEINAIHSLQLIMRESFSSARDSDSKAEMSVQQSDTVSQDIGELSSVACEMVRLIETATAPIFGVDSTGVINGWNAKIAELVGLQTGEALGRSLDEIVHDDSRGTVGNLVLHALQGVEDKNVELKLRKFGTDKENSAVYIVVNACASRDYTNKVIGVCFVGQDITSEKGMRDRFIRLQGDYRTIIESLSPLIPPIFVSDENGYCCEWTAAMEKLSGWSKDEVIGKMLVGEIFGNFCRLKDLDTLTRFMILLYQGIGGEQTEKFPLGFFNKNGDYVEVLLTSNKRTDAEGNVIGCICFLQVVEPNLQGVSEGLGLGERRGNLQLKELTYLKREMKNPLNGIKFTHELLVNSGITDNQKLFLVTSDACERQIMAIIEDMDFRSLEVGQVQINRDEFVLGSVLDAIICQIMIVVREKNIQLFHEIPEEIKVLTLCGDQIKLQLVLSDFLLSVVQNTPALDGWVEIKISAGLKLIQDGNEHIHLQIRMSHPGQGLPPELIQDMVGGGQQWSSEQGLALNLSRRLLNKLNGNACYVREQTKCYFLIDLELKLRRSRGSLEGTTSQRT 1129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2847129 2853657 - Cp4.1LG20g04900.1 Cpe20g00493 487122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00493 1129 SMART HisKA_10 888 952 IPR003661 GO:0000155|GO:0007165
Cpe20g00493 1129 Gene3D PAS domain 760 870 - -
Cpe20g00493 1129 ProSiteProfiles Histidine kinase domain profile. 895 1114 IPR005467 -
Cpe20g00493 1129 CDD PAS 625 731 IPR000014 -
Cpe20g00493 1129 Pfam GAF domain 228 399 IPR003018 GO:0005515
Cpe20g00493 1129 Gene3D - 209 560 IPR029016 -
Cpe20g00493 1129 SUPERFAMILY GAF domain-like 210 395 - -
Cpe20g00493 1129 Gene3D - 404 577 IPR043150 -
Cpe20g00493 1129 ProSiteProfiles PAC domain profile. 687 743 IPR000700 -
Cpe20g00493 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 727 IPR035965 -
Cpe20g00493 1129 Gene3D - 931 1104 IPR036890 -
Cpe20g00493 1129 Pfam Phytochrome region 412 586 IPR013515 GO:0006355|GO:0009584
Cpe20g00493 1129 Gene3D PAS domain 86 331 - -
Cpe20g00493 1129 Pfam PAS fold 82 195 IPR013654 GO:0006355
Cpe20g00493 1129 Pfam PAS fold 747 867 IPR013767 GO:0006355
Cpe20g00493 1129 Pfam PAS fold 617 731 IPR013767 GO:0006355
Cpe20g00493 1129 Gene3D PAS domain 615 735 - -
Cpe20g00493 1129 CDD HisKA 899 948 IPR003661 GO:0000155|GO:0007165
Cpe20g00493 1129 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 389 IPR016132 -
Cpe20g00493 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 749 863 IPR035965 -
Cpe20g00493 1129 PIRSF Phytochrome_conventional 14 1121 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cpe20g00493 1129 ProSiteProfiles PAS repeat profile. 614 684 IPR000014 -
Cpe20g00493 1129 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 429 449 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 514 533 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 547 565 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 709 726 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 729 749 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 SMART pas_2 746 816 IPR000014 -
Cpe20g00493 1129 SMART pas_2 616 682 IPR000014 -
Cpe20g00493 1129 MobiDBLite consensus disorder prediction 14 34 - -
Cpe20g00493 1129 ProSiteProfiles PAS repeat profile. 747 799 IPR000014 -
Cpe20g00493 1129 CDD PAS 758 868 IPR000014 -
Cpe20g00493 1129 PANTHER TWO-COMPONENT HISTIDINE KINASE 34 1118 - -
Cpe20g00493 1129 TIGRFAM sensory_box: PAS domain S-box protein 748 865 IPR000014 -
Cpe20g00493 1129 TIGRFAM sensory_box: PAS domain S-box protein 621 738 IPR000014 -
Cpe20g00493 1129 PANTHER PHYTOCHROME E 34 1118 - -
Cpe20g00493 1129 SUPERFAMILY GAF domain-like 407 584 - -
Cpe20g00493 1129 SMART gaf_1 228 409 IPR003018 GO:0005515
Cpe20g00493 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 196 IPR035965 -
Cpe20g00493 1129 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Cpe20g00493 1129 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 956 1101 IPR036890 -
Cpe20g00493 1129 MobiDBLite consensus disorder prediction 1 34 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00775 Cpe20g00493 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01327 Cpe-Chr3:10783802 Cpe20g00493 Cpe-Chr20:2847129 2.28E-34 dispersed
Cpe08g00149 Cpe-Chr8:975528 Cpe20g00493 Cpe-Chr20:2847129 0 dispersed
Cpe11g00763 Cpe-Chr11:6110050 Cpe20g00493 Cpe-Chr20:2847129 0 dispersed
Cpe15g00685 Cpe-Chr15:7435689 Cpe20g00493 Cpe-Chr20:2847129 0 dispersed
Cpe20g00493 Cpe-Chr20:2847129 Cpe13g00429 Cpe-Chr13:4620451 5.62E-06 dispersed
Cpe20g00493 Cpe-Chr20:2847129 Cpe09g00775 Cpe-Chr9:7209264 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00493 K12123 - csv:101214900 1917.51