Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00493 ATGGAGAATAGTCGGGGAGGAGGAAGAGGAATGGCGGCGTTTTCGTCCTCGGCGGAAAGCAATACCAGGGCTCGTCCGAGCAACACCGCTAGCACCGACAACAGAGCTGCGGCACTTGTGCAATACAATGCTGATGCTGGGCTTTTGAACAAGTTTGAGCAATCGGATGCCTCTGGTGAGTCTTTTAACTATTCGAGATCAGTTCTTGAAGCTCCACAGTCTGTACCTGAAGAACAAATTACTGCTTATCTGTCTAAGATTCAGAGGGGTGGAATGGTTCAACCGTTTGGTTGTTTGCTTGCGATTGAAGAATCTAGTCTTAAGATTATTAGCTATAGTGAGAATTGTTTTGAATTATTGGGGATAAATTATCAGTTTGAGTCGGCACCGGGGAAGGGTCTAATTGGGGTTCATATAAGAGCTCTGTTTACGCCTTCCTCCGGTGCTTCTTTGGCTAAAGCGGCTTCATCCAGGGAGATTTCGTTGTTGAATCCTGTTTGGGTTTATTCTAGGAATACCCAGAAGCCATTTTATGCCATATTGCATAGGATTGATGTGGGGATTGTAATTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCACTGTCGCTTGCCGGCGCCGTGCATTCACAGAAACTTGCGGTTCGAGCCATTTCCAGGTTGCAGGCTCTACCTGGTGGTGATATTGGTGTTTTATGTGATACGGTTGTGGAGGATGTTCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCGGACTTGGAGCCATATCTCGGTTTGCACTATCCTGCCATTGATATACCCCAAGCTGCTCGTTTCTTGTTCAAGCAGAACCGCGTTAGGATGATTTGCGATTGCCACGCGAAGCCTGTGCAGGTCATTCAAAGTGATGAGCTAAAGCAGCCTCTTTGTTTGGTTAATTCAACACTTCGATCACCACATAGTTGTCATTTGCAGTACATGGCAAATATGGGTTCCATAGCCTCATTGGCAATGGCAGTAATCATGAACAGTGATGACTCTCCAACAAGGTTATGGGGCCTGGTAGTGTGCCACCATACTTCAGCACGATATGTCCCTTTCCCACTTCGTTATGCTTGCGAGTTTCTCATGCAGGCTTTCGGGCTGCAACTTTACATGGAGCTTCAATTGGCATTACAAATAACAGAGAAAAAGGTTCTCAAGACACAAACCTTACTCTGTGACATGCTCCTCCGAGGCTCCCCTTATGCATTGCTGACCCAGTCACCTAGTATAAAGGATCTCGTGAAGTGTGATGGAGCTGCATTGTACTATCAGGGGGCATGTTGTCTACTAGGTGTAACTCCAACTGAAGCCCAAGTTAAAAACCTTGTCGAGTGGATACTCAATAACCATGGAGATTCTACAGGACTGAGCACGGATAGCTTGGCTGATGCTGGCTATCCCGAAGCTGCTTCACTAGGTGATGCAATATGTGGAATGACTGCTGCAAGAATTAGTTCAAAAGATTTCTTATTCTGGTTCCGTTCCCATGCCGCAAAAGAAATCCAATGGGGAGGAGCCAAGCATCATCCAGATGATAAGGATGATGGTGGAAGAATGCACCCAAGGTCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAAAAGTATGTCATGGGAAGCTCAAGAAATAAATGCCATTCACTCATTGCAGCTTATTATGAGGGAGTCTTTCTCGAGCGCTAGGGACAGTGATTCGAAGGCAGAAATGTCTGTCCAGCAGAGTGATACTGTGTCTCAGGACATCGGCGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGATTGATTGAAACAGCAACCGCTCCAATTTTTGGGGTTGACTCAACTGGTGTGATCAATGGATGGAATGCTAAAATAGCTGAACTCGTAGGATTACAAACTGGAGAAGCTTTGGGGAGATCTCTTGATGAAATCGTTCATGATGATTCACGTGGAACTGTTGGAAATTTAGTTCTTCATGCTCTGCAAGGTGTGGAAGACAAAAATGTGGAGTTAAAACTGAGAAAGTTTGGAACTGATAAAGAAAACTCAGCTGTGTATATTGTAGTTAATGCTTGCGCAAGTAGGGATTACACAAATAAAGTTATTGGGGTTTGCTTTGTTGGGCAAGATATAACGTCGGAGAAGGGCATGAGGGATAGATTTATCCGTCTGCAGGGAGATTATAGGACAATCATTGAAAGTCTGAGTCCATTGATTCCACCAATTTTCGTTTCCGACGAGAATGGTTACTGCTGTGAATGGACTGCTGCCATGGAGAAGCTTTCTGGTTGGAGTAAAGATGAAGTTATAGGGAAAATGCTTGTAGGGGAGATTTTTGGGAACTTCTGTAGGTTGAAAGATCTAGATACCCTCACTAGGTTTATGATCCTATTATATCAAGGCATTGGTGGTGAACAAACTGAGAAGTTTCCATTAGGATTTTTCAATAAGAATGGTGACTATGTGGAGGTGCTTTTAACATCAAACAAAAGGACTGATGCAGAAGGAAATGTCATTGGTTGTATCTGTTTCCTGCAAGTTGTTGAGCCAAACTTGCAAGGGGTCTCTGAAGGACTCGGCCTGGGCGAAAGACGGGGCAATTTGCAGCTTAAGGAGTTGACTTACTTAAAGCGGGAGATGAAAAATCCTTTAAATGGCATCAAATTTACTCATGAACTCCTTGTAAATTCTGGCATTACAGACAACCAGAAACTCTTCCTTGTTACTAGCGATGCGTGCGAGAGACAGATCATGGCAATCATTGAGGATATGGACTTCAGAAGTTTAGAAGTGGGCCAAGTACAGATAAACAGAGACGAGTTTGTCCTCGGGAGTGTTCTGGATGCCATTATCTGTCAAATCATGATTGTTGTCAGAGAGAAGAACATACAACTGTTTCATGAAATTCCAGAAGAAATTAAAGTGTTAACTCTTTGTGGCGATCAAATTAAACTTCAGCTGGTTTTATCAGATTTCTTACTTAGCGTAGTGCAGAACACGCCTGCTCTGGACGGTTGGGTTGAAATCAAAATTTCAGCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGGCTGCCTCCTGAACTAATCCAAGATATGGTTGGAGGAGGACAACAGTGGAGTTCAGAGCAAGGCCTCGCCCTAAATCTGTCACGCAGACTTCTCAATAAATTAAACGGTAATGCCTGCTATGTTAGAGAGCAAACTAAATGCTACTTCCTCATTGATCTCGAACTCAAGTTAAGGCGCTCGAGGGGGTCGCTGGAAGGCACTACAAGCCAAAGGACTTGA 3390 43.86 MENSRGGGRGMAAFSSSAESNTRARPSNTASTDNRAAALVQYNADAGLLNKFEQSDASGESFNYSRSVLEAPQSVPEEQITAYLSKIQRGGMVQPFGCLLAIEESSLKIISYSENCFELLGINYQFESAPGKGLIGVHIRALFTPSSGASLAKAASSREISLLNPVWVYSRNTQKPFYAILHRIDVGIVIDLEPARSVDPALSLAGAVHSQKLAVRAISRLQALPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRMICDCHAKPVQVIQSDELKQPLCLVNSTLRSPHSCHLQYMANMGSIASLAMAVIMNSDDSPTRLWGLVVCHHTSARYVPFPLRYACEFLMQAFGLQLYMELQLALQITEKKVLKTQTLLCDMLLRGSPYALLTQSPSIKDLVKCDGAALYYQGACCLLGVTPTEAQVKNLVEWILNNHGDSTGLSTDSLADAGYPEAASLGDAICGMTAARISSKDFLFWFRSHAAKEIQWGGAKHHPDDKDDGGRMHPRSSFKAFLEVAKSKSMSWEAQEINAIHSLQLIMRESFSSARDSDSKAEMSVQQSDTVSQDIGELSSVACEMVRLIETATAPIFGVDSTGVINGWNAKIAELVGLQTGEALGRSLDEIVHDDSRGTVGNLVLHALQGVEDKNVELKLRKFGTDKENSAVYIVVNACASRDYTNKVIGVCFVGQDITSEKGMRDRFIRLQGDYRTIIESLSPLIPPIFVSDENGYCCEWTAAMEKLSGWSKDEVIGKMLVGEIFGNFCRLKDLDTLTRFMILLYQGIGGEQTEKFPLGFFNKNGDYVEVLLTSNKRTDAEGNVIGCICFLQVVEPNLQGVSEGLGLGERRGNLQLKELTYLKREMKNPLNGIKFTHELLVNSGITDNQKLFLVTSDACERQIMAIIEDMDFRSLEVGQVQINRDEFVLGSVLDAIICQIMIVVREKNIQLFHEIPEEIKVLTLCGDQIKLQLVLSDFLLSVVQNTPALDGWVEIKISAGLKLIQDGNEHIHLQIRMSHPGQGLPPELIQDMVGGGQQWSSEQGLALNLSRRLLNKLNGNACYVREQTKCYFLIDLELKLRRSRGSLEGTTSQRT 1129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2847129 2853657 - Cp4.1LG20g04900.1 Cpe20g00493 487122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00493 1129 SMART HisKA_10 888 952 IPR003661 GO:0000155|GO:0007165
Cpe20g00493 1129 Gene3D PAS domain 760 870 - -
Cpe20g00493 1129 ProSiteProfiles Histidine kinase domain profile. 895 1114 IPR005467 -
Cpe20g00493 1129 CDD PAS 625 731 IPR000014 -
Cpe20g00493 1129 Pfam GAF domain 228 399 IPR003018 GO:0005515
Cpe20g00493 1129 Gene3D - 209 560 IPR029016 -
Cpe20g00493 1129 SUPERFAMILY GAF domain-like 210 395 - -
Cpe20g00493 1129 Gene3D - 404 577 IPR043150 -
Cpe20g00493 1129 ProSiteProfiles PAC domain profile. 687 743 IPR000700 -
Cpe20g00493 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 727 IPR035965 -
Cpe20g00493 1129 Gene3D - 931 1104 IPR036890 -
Cpe20g00493 1129 Pfam Phytochrome region 412 586 IPR013515 GO:0006355|GO:0009584
Cpe20g00493 1129 Gene3D PAS domain 86 331 - -
Cpe20g00493 1129 Pfam PAS fold 82 195 IPR013654 GO:0006355
Cpe20g00493 1129 Pfam PAS fold 747 867 IPR013767 GO:0006355
Cpe20g00493 1129 Pfam PAS fold 617 731 IPR013767 GO:0006355
Cpe20g00493 1129 Gene3D PAS domain 615 735 - -
Cpe20g00493 1129 CDD HisKA 899 948 IPR003661 GO:0000155|GO:0007165
Cpe20g00493 1129 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 389 IPR016132 -
Cpe20g00493 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 749 863 IPR035965 -
Cpe20g00493 1129 PIRSF Phytochrome_conventional 14 1121 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cpe20g00493 1129 ProSiteProfiles PAS repeat profile. 614 684 IPR000014 -
Cpe20g00493 1129 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 429 449 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 514 533 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 547 565 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 709 726 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 PRINTS Phytochrome signature 729 749 IPR001294 GO:0006355|GO:0009584
Cpe20g00493 1129 SMART pas_2 746 816 IPR000014 -
Cpe20g00493 1129 SMART pas_2 616 682 IPR000014 -
Cpe20g00493 1129 MobiDBLite consensus disorder prediction 14 34 - -
Cpe20g00493 1129 ProSiteProfiles PAS repeat profile. 747 799 IPR000014 -
Cpe20g00493 1129 CDD PAS 758 868 IPR000014 -
Cpe20g00493 1129 PANTHER TWO-COMPONENT HISTIDINE KINASE 34 1118 - -
Cpe20g00493 1129 TIGRFAM sensory_box: PAS domain S-box protein 748 865 IPR000014 -
Cpe20g00493 1129 TIGRFAM sensory_box: PAS domain S-box protein 621 738 IPR000014 -
Cpe20g00493 1129 PANTHER PHYTOCHROME E 34 1118 - -
Cpe20g00493 1129 SUPERFAMILY GAF domain-like 407 584 - -
Cpe20g00493 1129 SMART gaf_1 228 409 IPR003018 GO:0005515
Cpe20g00493 1129 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 196 IPR035965 -
Cpe20g00493 1129 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Cpe20g00493 1129 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 956 1101 IPR036890 -
Cpe20g00493 1129 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00493 K12123 PHYE; phytochrome E - csv:101214900 1917.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00775 Cpe20g00493 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01327 Cpe-Chr3:10783802 Cpe20g00493 Cpe-Chr20:2847129 2.28E-34 dispersed
Cpe08g00149 Cpe-Chr8:975528 Cpe20g00493 Cpe-Chr20:2847129 0 dispersed
Cpe11g00763 Cpe-Chr11:6110050 Cpe20g00493 Cpe-Chr20:2847129 0 dispersed
Cpe15g00685 Cpe-Chr15:7435689 Cpe20g00493 Cpe-Chr20:2847129 0 dispersed
Cpe20g00493 Cpe-Chr20:2847129 Cpe13g00429 Cpe-Chr13:4620451 5.62E-06 dispersed
Cpe20g00493 Cpe-Chr20:2847129 Cpe09g00775 Cpe-Chr9:7209264 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g343 . . . . . . Bma14g00963 Bma01g01487 . Cmo18g00427 . . . . . Cpe09g00775 . . . . . . . . . . . . . . . . . . . . . Chy12g00013 . . . . . Bpe02g00962 . . . Sed01g2202 . . Cma13g00567 Cma18g00452 Car13g00449 Car18g00423 . Cpe20g00493 Bhi08g02111 Tan05g2567 Cmetu12g0178 Lac10g1014 Hepe07g1806 . . Cla03g00672 Cam03g0721 Cec03g0697 Cco03g0733 Clacu03g0719 Cmu03g1310 Cre03g1005 Lsi02g00857 Csa01g02269 . Cme12g01234
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe14g01030 . 5 1148 Histidine Kinase Gene Family AT2G17820 63.4 0.0e+00 1401.7
Cpe08g01314 . 5 1195 Histidine Kinase Gene Family AT2G17820 61.5 0.0e+00 1370.1
Cpe01g00013 . 28 1008 Histidine Kinase Gene Family AT2G01830 70.6 0.0e+00 1326.2
Cpe13g00429 CCT 5 964 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1307.7
Cpe01g01858 CCT 23 1023 Histidine Kinase Gene Family AT2G01830 69.1 0.0e+00 1302.0
Cpe16g00390 . 301 1244 Histidine Kinase Gene Family AT2G01830 52.9 1.2e-269 926.8
Cpe04g00676 . 280 1205 Histidine Kinase Gene Family AT2G01830 52.8 4.0e-268 921.8
Cpe01g00966 . 99 1016 Histidine Kinase Gene Family AT2G01830 52.0 7.5e-259 891.0
Cpe02g00308 CCT 1 998 Histidine Kinase Gene Family AT5G10720 57.2 1.2e-292 1003.0
Cpe06g00274 CCT 1 996 Histidine Kinase Gene Family AT5G10720 56.1 6.1e-289 990.7
Cpe11g00763 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.5 0.0e+00 1820.1
Cpe07g00609 . 35 1108 Histidine Kinase Gene Family AT1G09570 70.5 0.0e+00 1575.5
Cpe15g00685 . 18 1111 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1206.0
Cpe03g01327 CST 443 1507 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1178.3
Cpe08g00149 CST 31 1111 Histidine Kinase Gene Family AT1G09570 52.2 0.0e+00 1138.6
Cpe03g01327 CST 421 1448 Histidine Kinase Gene Family AT2G18790 77.5 0.0e+00 1625.1
Cpe08g00149 CST 30 1052 Histidine Kinase Gene Family AT2G18790 76.9 0.0e+00 1594.3
Cpe20g00493 CCT 31 1050 Histidine Kinase Gene Family AT2G18790 59.7 0.0e+00 1228.8
Cpe09g00775 CCT 31 1025 Histidine Kinase Gene Family AT2G18790 60.2 0.0e+00 1212.2
Cpe11g00763 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1087.8
Cpe15g00685 . 26 1068 Histidine Kinase Gene Family AT2G18790 52.0 0.0e+00 1076.6
Cpe07g00609 . 38 1042 Histidine Kinase Gene Family AT2G18790 50.3 3.0e-298 1021.9
Cpe15g00685 . 12 1115 Histidine Kinase Gene Family AT5G35840 60.8 0.0e+00 1359.0
Cpe03g01327 CST 429 1509 Histidine Kinase Gene Family AT5G35840 51.9 0.0e+00 1124.4
Cpe11g00763 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1110.5
Cpe08g00149 CST 31 1113 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1099.7
Cpe03g01327 CST 438 1509 Histidine Kinase Gene Family AT4G16250 75.8 0.0e+00 1668.7
Cpe08g00149 CST 34 1113 Histidine Kinase Gene Family AT4G16250 73.5 0.0e+00 1627.1
Cpe20g00493 CCT 32 1112 Histidine Kinase Gene Family AT4G16250 57.9 0.0e+00 1268.8
Cpe09g00775 CCT 38 1081 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1230.7
Cpe11g00763 . 8 1115 Histidine Kinase Gene Family AT4G16250 53.0 0.0e+00 1135.9
Cpe15g00685 . 26 1114 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1106.7
Cpe07g00609 . 37 1103 Histidine Kinase Gene Family AT4G16250 50.5 7.1e-311 1063.9
Cpe20g00493 CCT 15 1126 Histidine Kinase Gene Family AT4G18130 62.7 0.0e+00 1369.8
Cpe09g00775 CCT 15 1098 Histidine Kinase Gene Family AT4G18130 60.2 0.0e+00 1308.1
Cpe03g01327 CST 446 1507 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1250.3
Cpe08g00149 CST 42 1111 Histidine Kinase Gene Family AT4G18130 56.8 0.0e+00 1233.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00493 Cpe_Chr20 FPKM 4.315298 4.247411 3.539596 4.820969 3.714027 3.68873 3.571925 0.0 0.0 0.0