Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00539 ATGGACGGCGGCGGTGGGAGGTTGAAGGCCTCGAGTTCGAGCAATGGTGGTAGAACCCGCGTGGGAAAATACGAGTTGGGTAGAACCCTAGGTGAAGGAAACTTCGCCAAGGTCAAGTTTGCTCGGAACACGGAGACCGATGACAACGTGGCGATCAAAATTCTCGACAAGGAGAAAGTTCTTAAGCACAAGATGATCAGTCAGATTAAACGCGAGATAGCAACAATGAAATTAATTAGGCATCCAAATGTTATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACTGGTGGGGAACTATTTGATAAGATAGTTAGCAGAGGCAGGATGAAGGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATTAATGCTGTGGATTATTGTCATAGCAGAGGTGTTTTTCACAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACTTGTGGAACACCAAACTATGTTGCTCCAGAGGTGATCAATAATAAAGGCTATGACGGGGCAAAGGCTGACTTATGGTCATGTGGTGTAATTCTTTTCGTTTTGATGGCTGGTTATTTACCCTTTGAAGATTCCAACCTGATACACAAGGCTGAGTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAATTAATCAAAAGAATTTTGGATCCCAATCCCGCTACGAGAATTACCATTCCAGAGGTCATTGAAAATGAATGGTTTAGAAAAGGTTATAAGCCCCCCACTTTTGAACAAGCTGATATTAGTCTGGATGATGTGGATGCTATCTTCAATGAAACAGGGGTTTCGGGTAATCTCGTAGTGGAAAGGAAAGAGGAAAGACCTGCAGCCCCTCTTACGATGAATGCATTCGAGCTCATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGCTTGTTAAACGAGAAACAAGGTTCACATCCAATCGACCTGCAAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGGCATTTATCAGTTGCAACAGAGATTTACGAGGTTGCTCCGTCACTGTATATGGTTGAGCTCCGCAAGGCGGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAAACTGGGCTGAAAGACATTGTCTGGAAACATGAAGAGGATGGAGACGAAGGAGATAGTGGTTTGTAA 1359 42.24 MDGGGGRLKASSSSNGGRTRVGKYELGRTLGEGNFAKVKFARNTETDDNVAIKILDKEKVLKHKMISQIKREIATMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLIHKAEFTCPPWFSTNAKKLIKRILDPNPATRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGVSGNLVVERKEERPAAPLTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSNRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDGDEGDSGL 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3136138 3141804 + Cp4.1LG20g05370.1 Cpe20g00539 487168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00539 452 CDD CIPK_C 321 436 - -
Cpe20g00539 452 SMART serkin_6 24 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00539 452 Pfam Protein kinase domain 24 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00539 452 SUPERFAMILY Protein kinase-like (PK-like) 21 284 IPR011009 -
Cpe20g00539 452 PANTHER SERINE/THREONINE KINASE 18 445 - -
Cpe20g00539 452 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Cpe20g00539 452 Gene3D Kinase associated domain 1, KA1 315 440 - -
Cpe20g00539 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Cpe20g00539 452 ProSiteProfiles Protein kinase domain profile. 24 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00539 452 ProSiteProfiles NAF domain profile. 315 339 IPR018451 GO:0007165
Cpe20g00539 452 MobiDBLite consensus disorder prediction 1 23 - -
Cpe20g00539 452 Gene3D Transferase(Phosphotransferase) domain 1 104 280 - -
Cpe20g00539 452 Gene3D Phosphorylase Kinase; domain 1 13 103 - -
Cpe20g00539 452 CDD STKc_SnRK3 23 272 - -
Cpe20g00539 452 Pfam NAF domain 317 377 IPR004041 GO:0007165
Cpe20g00539 452 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 18 445 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00071 Cpe20g00539 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01812 Cpe-Chr3:13563708 Cpe20g00539 Cpe-Chr20:3136138 0 dispersed
Cpe08g00617 Cpe-Chr8:4069686 Cpe20g00539 Cpe-Chr20:3136138 0 dispersed
Cpe12g00350 Cpe-Chr12:2366003 Cpe20g00539 Cpe-Chr20:3136138 9.47E-93 dispersed
Cpe20g00539 Cpe-Chr20:3136138 Cpe05g00997 Cpe-Chr5:6525607 1.27E-168 dispersed
Cpe05g00542 Cpe-Chr5:3233700 Cpe20g00539 Cpe-Chr20:3136138 0 transposed
Cpe18g00496 Cpe-Chr18:5756549 Cpe20g00539 Cpe-Chr20:3136138 0 transposed
Cpe10g00071 Cpe-Chr10:526181 Cpe20g00539 Cpe-Chr20:3136138 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63090 PF00069 Pkinase 8.10E-73 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00539 - - csv:101222334 849.351