Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00544 ATGCAGAATGGGGCGTCACACCTTAGGGGAGTCGGCAACGACAGTGCTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGTACCGATTTTTCTGTGAATCCAACCATGACATCCTCAAATTGCATCGACGAGTCGGGTTTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCACCCACCCAATGGAACCTTTGTCAAGGTTCACAAGTCAGGGACCTACAGTAGGTCGTTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTTGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGACGTTCTTCTCCTTGGTGATGGCCCGTGGCCGGAGTTTGTAAGCAGTGTGTGGTGTATCAAAATACTTTCACCAGAAGAAGTTCATGAAATGGGCAAACGAGGTTTAGAACTTCTGAACTCTGTGCCAATTCAGAGGCTCTCAAACAGTACCTGTGACGACTACGGTAGCCGACAGGACTCGAGAAATTTAGTTTCAGGGATAACCTCTGTCGGGCCTCTCGACTACTGA 603 48.09 MQNGASHLRGVGNDSASTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQVNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVSSVWCIKILSPEEVHEMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLVSGITSVGPLDY 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3180981 3181804 - Cp4.1LG20g05560.1 Cpe20g00544 487173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00544 200 ProSiteProfiles PB1 domain profile. 67 151 IPR000270 GO:0005515
Cpe20g00544 200 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 179 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe20g00544 200 Gene3D - 65 156 - -
Cpe20g00544 200 PANTHER AUXIN RESPONSE FACTOR 6 1 179 - -
Cpe20g00544 200 SUPERFAMILY CAD & PB1 domains 64 142 - -
Cpe20g00544 200 Pfam AUX/IAA family 113 156 IPR033389 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00065 Cpe20g00544 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00544 Cpe-Chr20:3180981 Cpe01g01963 Cpe-Chr1:16738823 1.23E-44 dispersed
Cpe20g00544 Cpe-Chr20:3180981 Cpe20g00545 Cpe-Chr20:3182872 1.04E-142 tandem
Cpe10g00065 Cpe-Chr10:472288 Cpe20g00544 Cpe-Chr20:3180981 3.39E-97 wgd
Cpe19g01157 Cpe-Chr19:7752738 Cpe20g00544 Cpe-Chr20:3180981 4.39E-72 wgd
Cpe20g00544 Cpe-Chr20:3180981 Cpe09g00742 Cpe-Chr9:6895319 3.87E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51139 PF02309 AUX_IAA 6.40E-05 CL0072 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00544 - - csv:101211705 375.941