Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00545 ATGAGGCTCTCTGCGGCTGGTTTTAGTCCTCAGCCGCCGGAAGGCGAGAGAAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCGGGTCCTCTTGTTTCTCTGCCGGCTGTTGGCACTCGCGTTGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTGCTGCATCTACCAACAAAGAGGTCGATGCCCAGATCCCGAATTACCCGAGTTTACCGCCACAACTCATCTGTCAGCTTCATAACCTCACAATGCATGCAGATGCTGAGACAGATGAAGTATATGCACAGATGACTCTGCAACCCTTGAGTGCTCAAGAATTGAAAGAAGCCTACCTTCCAGCTGAGTTGGGGTCTCCAAGTAGGCAGCCAACGAATTACTTTTGCAAAACTTTGACAGCCAGTGATACGAGCACACATGGCGGTTTTTCTGTTCCTCGTCGTGCTGCCGAAAAAGTATTCCCCCCTTTGGACTTCTCCATGCAGCCCCCAGCTCAAGAGCTGATAGCGAGGGACTTACATGATAATGAATGGAAATTTAGACATATATTTCGTGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTGTTCGTGAGTGCTAAAAGACTTGTTGCTGGTGATGCTGTTCTTTTTATCTGGAATGAGAAGAATCAGTTACTCCTCGGAATCAGGCGTGCAAGTCGACCGCAAACCGTGATGCCTTCATCTGTTTTGTCAAGTGATAGTATGCATTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCTACCAACAGTCGATTTACCATATTTTTTAACCCAAGAGCTAGCCCTTCAGAGTTTGTCATACCACTCACTAAATACGTGAAGGCTGTCTACCATACTCGTGTTTCTGTTGGTATGCGCTTTAGGATGCTGTTTGAAACGGAAGAATCGAGTGTTCGTCGCTACATGGGCACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAACTCACATTGGCGCTCGGTCAAGGTTGGCTGGGACGAATCAACAGCAGGAGAGCGGCAGCCAAGAGTGTCCTTGTGGGAAATTGAACCACTGACAACATTTCCAATGTATCCATCTCCATTTCCACTTCGGCTGAAGCGACCATGGCCAACGGGACTGCCTTCGTTCGGCATCAAGGATAGCGACCTCGGAATGAATTCTCCGTTCATGTGGCTACGGGGAGATAATTGTCTAAACTTTCAGGGAAACGGGGTGTCACCGTGGATGCAGCCAAGGCTTGATACATCCATGATGGCAATGCAACCTGACATGTACCAAGCCATGGCTACTGCAGCTCTTCAGGAGATGAGGGCAATCGATTATTCGAAAATAGCACCTGCATCTGTTCTGCAATTCCAGCAGTCCCAAGGGCTTCCTTGTCAGTCTTCTTCCTTAATGCAGCCTCAGATGATGCATCAGTCTCAACCCCAGCAGGCGTTTCTACAATCTATTCAAGAAAACCAGCAGCATCATCTTCAGCCACAATTGCAGCCCCAGCAATTCAATAATCAACAACAGCAACCAAGGCAGCCACAGCCACCGCAACTCGATCATCAGCAGATTCCTTGTACGATACCGGCGGCTATATCTCAGTTTGCTTCATGTTCTCAATCCCAGTTGCCGTCCCTGCAAACCATCCCTTCCCTTTGCCAACAACCGAGTTTTTCCGACTCCAATTGTAACCCTGTAACTACTACTGTTTCCCCATTGCATAGCCTTGCGGGGTCGTCATCTGTTCAAGACGAATCGTCTCAGCTGCTTAACCTTCAAAGAGCAAATTCAATAATTCCTTCAGCTGGCTGGCCAGCAAAGAGAGCTGCTATTGACCCTCTCACTACTGGAGCTTCTCAATATTTTCTGCCTCAAGGGGAAATTTTGGGAACATCACAGAGTAGTATTCCTCAGAATACAGTGGCATTGCCACCCTTCCCTGGAAGGGAGTGTTCTAACGGTGACCGAGACGACGGTTCTGATCCACAAAACCATGTTTTATTTGGTGTGAATATAGAGTCTTCATCCCTTCTAATGCAGAATGGGGCGTCACACCTTAGGGGAGTCGGCAACGACAGTGCTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGTACCGATTTTTCTGTGAATCCAACCATGACATCCTCAAATTGCATCGACGAGTCGGGTTTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCACCCACCCAATGGAACCTTTGTCAAGGTTCACAAGTCAGGGACCTACAGTAGGTCGTTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTTGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGACGTTCTTCTCCTTGGTGATGGCCCGTGGCCGGAGTTTGTAAGCAGTGTGTGGTGTATCAAAATACTTTCACCAGAAGAAGTTCATGAAATGGGCAAACGAGGTTTAGAACTTCTGAACTCTGTGCCAATTCAGAGGCTCTCAAACAGTACCTGTGACGACTACGGTAGCCGACAGGACTCGAGAAATTTAGTTTCAGGGATAACCTCTGTCGGGCCTCTCGACTACTGA 2652 48.27 MRLSAAGFSPQPPEGERRVLNSELWHACAGPLVSLPAVGTRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGSPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGIKDSDLGMNSPFMWLRGDNCLNFQGNGVSPWMQPRLDTSMMAMQPDMYQAMATAALQEMRAIDYSKIAPASVLQFQQSQGLPCQSSSLMQPQMMHQSQPQQAFLQSIQENQQHHLQPQLQPQQFNNQQQQPRQPQPPQLDHQQIPCTIPAAISQFASCSQSQLPSLQTIPSLCQQPSFSDSNCNPVTTTVSPLHSLAGSSSVQDESSQLLNLQRANSIIPSAGWPAKRAAIDPLTTGASQYFLPQGEILGTSQSSIPQNTVALPPFPGRECSNGDRDDGSDPQNHVLFGVNIESSSLLMQNGASHLRGVGNDSASTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQVNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVSSVWCIKILSPEEVHEMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLVSGITSVGPLDY 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3182872 3193848 - Cp4.1LG20g05550.1 Cpe20g00545 487174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00545 883 Pfam AUX/IAA family 746 839 IPR033389 -
Cpe20g00545 883 Gene3D - 125 228 IPR015300 -
Cpe20g00545 883 SMART B3_2 127 229 IPR003340 GO:0003677
Cpe20g00545 883 Gene3D - 291 363 - -
Cpe20g00545 883 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 862 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe20g00545 883 Gene3D - 748 839 - -
Cpe20g00545 883 ProSiteProfiles PB1 domain profile. 750 834 IPR000270 GO:0005515
Cpe20g00545 883 PANTHER AUXIN RESPONSE FACTOR 6 1 862 - -
Cpe20g00545 883 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Cpe20g00545 883 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe20g00545 883 MobiDBLite consensus disorder prediction 507 527 - -
Cpe20g00545 883 CDD B3_DNA 126 227 IPR003340 GO:0003677
Cpe20g00545 883 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cpe20g00545 883 SUPERFAMILY CAD & PB1 domains 747 825 - -
Cpe20g00545 883 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00742 Cpe20g00545 CCT
Cpe19g01157 Cpe20g00545 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00742 Cpe-Chr9:6895319 Cpe20g00545 Cpe-Chr20:3182872 0 dispersed
Cpe10g00065 Cpe-Chr10:472288 Cpe20g00545 Cpe-Chr20:3182872 0 dispersed
Cpe11g01202 Cpe-Chr11:9801668 Cpe20g00545 Cpe-Chr20:3182872 1.25E-158 dispersed
Cpe13g00526 Cpe-Chr13:5354326 Cpe20g00545 Cpe-Chr20:3182872 0 dispersed
Cpe19g01041 Cpe-Chr19:7200777 Cpe20g00545 Cpe-Chr20:3182872 3.36E-106 dispersed
Cpe19g01157 Cpe-Chr19:7752738 Cpe20g00545 Cpe-Chr20:3182872 0 dispersed
Cpe20g00544 Cpe-Chr20:3180981 Cpe20g00545 Cpe-Chr20:3182872 1.04E-142 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51140 PF02309 AUX_IAA 8.60E-07 CL0072 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00545 - - csv:101211705 1548.87