Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00561 ATGGATTCCTTGAATAAGCAAATGGATACCAGCAAGTATGTGAGATATACACCTGAGCAAGTCGATGCATTAGAGAGGGTATATGCTGAATGCCCAAAGCCTAGTTCGTTGAGGAGACAACAACTCATTCGTGAGTGCCCCATTCTCTCTAATATTGAGCCCAAACAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCGTCTCGTCTTCAAACAGTTAATAGGAAGCTGACTGCGATGAACAAGCTGCTGATGGAAGAGAACGACCGTCTGCAGAAGCAGGTCTCTCGTTTGGTTTACAAGAACGGATACATGAGACAGCAACTGCGCACTGCATCTGGAACAACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAACACCATCAACAGCAAAACCCAACTAAGCATACCCAAAAGGATGCTAATAACCCAGCTGGTCTTCTTGCAATAGCCGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCAACAGGAACCGCTGTCGACTGGGTTCAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCTCGAAATTGCAATGGGGTAGCAGCACGAGCCTGTGGTTTAGTGAGTCTTGAGCCAACGAAGGTGGCCGAAATTCTCAAAGATCGTTTGTCGTGGTTTCGTGACTGCCGTTGTGTTGATGTATTAAGTGTAATGTCCACCGGAAATGGGGGGACCATAGAACTCTTGTATATGCAGACATATGCACCGACAACCTTAGCAGCAGCACGTGACTTTTGGACTCTTCGATACACCACAAGCTTGGAAGATGGAAGCCTTGTGATATGTGAGAGATCGTTAACGTCGTCTACTGGTGGCCCATCAGGGCCCCCTTCATCCAGTTTCGTGAGAGCTGAAATGCTTCCGAGCGGATATCTTATTCGAGCTTGTGAGGATGGTTCCCTTATTCACATTGTGGATCATGTTGATTTAGATGCTTGGAGCGTTCCTGAAGTTCTTAGGCCACTTTACGAGTCGACAAAGATTCTAGCTCAGAGAAGGACTGTTGCTGCTTTACGCTACGTTCGGCAAATTGCTCATGAGGCGAGTGGAGAAATTCAATTGGGTGGCGGGCGCCAACCAGCTGTTTTAAGGACTTTCAGTCAAAGGCTCTCTAGGGGTTTTAATGATGCTGTAAATGGCTTTGTGGATGATGGTTGGTCGCTTATGGATAGCGATGGAGTCGAGGATGTGACGGTTGTTGTTAATTCATCTCCAAACAAATTCATCGGTTCGCAATATAACCAATCATTATATCCTACTTTTGGAGGTGTATTGTGTGCGAAGGCGTCGATGTTGTTGCAGAATGTGCCCCCTGCTTTGCTTGTTCGTTTCCTACGGGAGCATCGTTCAGAATGGGCTGATTATGGAGTCGATGCATACTCGGCCGCATGTCTTAAATCCAGTGCATATGCTGTTCCATGTGCGAGACCCGGTGGCTTCCCTAGTGGTCAGGTCATTTTACCACTTGCGCATACCGTTGAAAACGAAGAGTTCTTGGAGGTCGTTCGGTTAGAGGGTCATGCTATGTTCCCTGAAGAAGCTGCGTTAGGTGGGCGGGATATGTATTTATTGCAGCTGTGTAGCGGGGTTGATGAAAGTACAGTCGGTTCCTGCGCTCAGCTTGTATTTGCACCTATCGACGAATCATTTGCCGACGATGCTCCCTTACTACCGTCTGGTTTTCGTGTCATACCATTGGAGTCCAAAACAGGATTTGCATACCTTCCAGCAGGGATATGCATATCGAGTATGGGCAGGCCGGTGTCGTATGAACAGGCGATTGCCTGGAAAGTTCTGAATGATGATGATGTTCATCACTGTTTGGCTTTCATGTTTGTTAACTGGTCATTTATGTGA 1929 47.02 MDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSRLVYKNGYMRQQLRTASGTTTDNSCESVVMSGQHHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPTKVAEILKDRLSWFRDCRCVDVLSVMSTGNGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPSGPPSSSFVRAEMLPSGYLIRACEDGSLIHIVDHVDLDAWSVPEVLRPLYESTKILAQRRTVAALRYVRQIAHEASGEIQLGGGRQPAVLRTFSQRLSRGFNDAVNGFVDDGWSLMDSDGVEDVTVVVNSSPNKFIGSQYNQSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKSSAYAVPCARPGGFPSGQVILPLAHTVENEEFLEVVRLEGHAMFPEEAALGGRDMYLLQLCSGVDESTVGSCAQLVFAPIDESFADDAPLLPSGFRVIPLESKTGFAYLPAGICISSMGRPVSYEQAIAWKVLNDDDVHHCLAFMFVNWSFM 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3318745 3327279 - Cp4.1LG20g05670.1 Cpe20g00561 487190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00561 642 Coils Coil 81 101 - -
Cpe20g00561 642 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 594 642 - -
Cpe20g00561 642 Pfam Homeodomain 12 70 IPR001356 GO:0003677
Cpe20g00561 642 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 594 642 IPR044830 GO:0003700
Cpe20g00561 642 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 4 594 - -
Cpe20g00561 642 Pfam START domain 160 367 IPR002913 GO:0008289
Cpe20g00561 642 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 4 594 IPR044830 GO:0003700
Cpe20g00561 642 SMART HOX_1 9 75 IPR001356 GO:0003677
Cpe20g00561 642 CDD homeodomain 12 72 IPR001356 GO:0003677
Cpe20g00561 642 Gene3D - 178 367 IPR023393 -
Cpe20g00561 642 ProSiteProfiles 'Homeobox' domain profile. 7 71 IPR001356 GO:0003677
Cpe20g00561 642 SMART START_1 159 368 IPR002913 GO:0008289
Cpe20g00561 642 Pfam MEKHLA domain 593 641 IPR013978 -
Cpe20g00561 642 CDD bZIP 64 103 - -
Cpe20g00561 642 ProSiteProfiles START domain profile. 150 363 IPR002913 GO:0008289
Cpe20g00561 642 SUPERFAMILY Homeodomain-like 12 74 IPR009057 -
Cpe20g00561 642 Gene3D - 4 78 - -
Cpe20g00561 642 SUPERFAMILY Bet v1-like 160 349 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00053 Cpe20g00561 CCT
Cpe19g01171 Cpe20g00561 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00053 Cpe-Chr10:353954 Cpe20g00561 Cpe-Chr20:3318745 0 wgd
Cpe19g01171 Cpe-Chr19:7886271 Cpe20g00561 Cpe-Chr20:3318745 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51141 PF01852 START 2.40E-52 CL0209 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00561 K09338 - csv:101211318 1132.47