Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00562 ATGAGTAATCTATCAGCGGATTTCAGGAGGCATGAATCAGCTAAAAGTAGATTGAAAGATTTATTGCTTCAGAAAGATAATCAAGTTTGTGCAGATTGTGGTGCCCCAGATCCTAAATGGGCCTCTGCAAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACACATATCAAAGGTTTTGTCAATAACATTGGATGAATGGTCTGATGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCCTTTATCCCTGTTGGATATACGAAGCCTGGACCAAGTGCCAGCCATGAGGATCGTTCAAAGTTCATTCGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCGAGCTTGCGAATTGTATCCAATAACTCCTCAAAGGAACCTGAGGAGCCAAGTTATTTTGAAGAGATTGTTGATAGCTTTCGAAGCTCAAATTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTACTGAAAGTCAAGGTGATCAAAGGCACAAACTTAGCCGTGAGAGATATGAAGTCCAGTGATCCTTTCATTACCTTGACTCTTGGGCAACAGACTGCTAAAACAACAGTGATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCATGTTGTCGGTTCCTCAGGAATACGGACCCTTGAAGTTGCAAGTGTTCGATCACGACATAATTTCAGCAAACGACTTAATGGGCGAAGCAGAAATCGACCTCCAGCCGATGATAACATCAGCAATGGCATTTGGAGATGCTAAAATGTTTGAGAATATGCAGATAGGAAAATGGTTGAAGTCAGACGACAATGCCCTGATCGACGACAGTGCTGTCGTCATCGTCGACGGGATGGTGAAACAAGAGATGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAAGTGTACTTAGAACTCGAGTGGATGCCTCTTGATCAGTAG 1002 41.62 MSNLSADFRRHESAKSRLKDLLLQKDNQVCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVGYTKPGPSASHEDRSKFIRSKYELQEFLKPSLRIVSNNSSKEPEEPSYFEEIVDSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDMKSSDPFITLTLGQQTAKTTVIKSNLNPVWNEELMLSVPQEYGPLKLQVFDHDIISANDLMGEAEIDLQPMITSAMAFGDAKMFENMQIGKWLKSDDNALIDDSAVVIVDGMVKQEMSLKLQNVESGEVYLELEWMPLDQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3336764 3340529 + Cp4.1LG20g05590.1 Cpe20g00562 487191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00562 333 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096
Cpe20g00562 333 Gene3D C2 domain 175 333 IPR035892 -
Cpe20g00562 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 175 331 IPR035892 -
Cpe20g00562 333 SMART arf_gap_3 15 137 IPR001164 GO:0005096
Cpe20g00562 333 ProSiteProfiles C2 domain profile. 160 274 IPR000008 -
Cpe20g00562 333 Gene3D Arf GTPase activating protein 2 136 IPR038508 -
Cpe20g00562 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Cpe20g00562 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Cpe20g00562 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Cpe20g00562 333 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cpe20g00562 333 CDD ArfGap 18 124 - -
Cpe20g00562 333 CDD C2_ArfGAP 177 320 - -
Cpe20g00562 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 144 IPR001164 GO:0005096
Cpe20g00562 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 10 333 - -
Cpe20g00562 333 SMART C2_3c 178 273 IPR000008 -
Cpe20g00562 333 Pfam C2 domain 177 267 IPR000008 -
Cpe20g00562 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 333 IPR044518 GO:0005096|GO:0005543
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00726 Cpe20g00562 CCT
Cpe10g00050 Cpe20g00562 CCT
Cpe19g01173 Cpe20g00562 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00050 Cpe-Chr10:333098 Cpe20g00562 Cpe-Chr20:3336764 8.67E-178 wgd
Cpe19g01173 Cpe-Chr19:7898767 Cpe20g00562 Cpe-Chr20:3336764 0 wgd
Cpe20g00562 Cpe-Chr20:3336764 Cpe09g00726 Cpe-Chr9:6673279 1.72E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00562 K12486 - csv:101211569 587.03