Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00587 ATGGACCAGATTAAATTGAGAGCAGATTCTGAGGCAAAAGGGGATCATTCTTCTAAGAGCAGTCATAAAAGTAGCCAGACTGCTGAGAGGTTGGGAAGTCCTCAGCATCAGAAGATTTCAGCTAGATGGGAACCGGACGAAGCATGCAGGCCTTTAATTGATGAAGCGCCTGTATTTTATCCTACTGTTGAGGAATTTGAAGATACACTTGGATACATAGCTAAGATTCGTCCTCAAGCAGAATCTTATGGTATATGCCGGATTGTCCCTCCATCTTCTTGGAATCCACCATGTGTTCTCAAGGAGAAATGTAAATGGGAAAATGCCATGTTTTCTACTCGTATTCAGCAAGTCGATTTGCTACAAAACAGGGAGCCCATGAGAAAGAAAAGTAGAGGCCGGAAACGCAAGCGAAGGAAGCATTCCAAAGCTGGTACATCAGCTAGGATCTCGAATCTTGGTGTAGAAGCAAATGCTACTTCCGAGTCTGATGAAAAATTTGGATTCAATTCTGGGTCAGACTTCACACTCAAAGATTTTCAGGCATATGCAGACTATTTTAAGGAATGTTATTTCGGACTTAATCAGGGCCGAGAGGATTTAAATCTTGATATTGAATCTAGCAAGAGACAGGAGCCTTCTGTGGAGGATATAGAGGGTGAATACTGGCGGATAGTTGAAAAATCTACAGATGAGGTTGAGGTTTACTATGGAGCTGATATAGAATCAGGAACATTTAGCAGTGGCTTTCCCAAGGCCTCATCCCTGGTAACTGAAGGAAGTTCAGATCCGTATGTAAAGTCAGGTTGGAATCTTAATAACCTCCCTCGCTTGCCAGGTTCTGTTCTGTGCTTTGAGGAAAGTGATATATCCGGAGTTCTAGTGCCATGGCTTTATGTCGGAATGTGCTTTTCGTCATTTTGTTGGCATGTTGAAGACCACCACCTTTACTCTTTAAACTATGTGCACTGGGGCGATCCGAAAGTATGGTATGGAGTTCCTGGAAGCCACGCATCTTCTTTAGAAGCTGCAATGAAAAAACATTTGCCTGATTTATTTGAGGAACAGCCAGATTTACTTCATGAATTGGTCACTCAATTATCTCCTTCAGTACTCAAATCTGAAGGAGTGCCTGTGTATCGAGTGATCCAAAATGCCAGGGAGTTTGTTCTTACCTTTCCCAGAGCATATCATGCAGGATTTAATTGTGGGTTCAACTGTGCTGAGGCTGTGAATGTGGCACCGGTTGACTGGTTGATTCATGGGCAAAATGCTGTAGAACTTTATAGTGCGCAGCGACATAGGACATCACTTTCACATGATAAATTGTTATTTGGTTCAGCTCTGGAAGCTGCCAAGGCCCTTTGGGAGATGTTAGTTCTAGAAAAGAGAACTCCAATTAATCTACATTGGAAAAGTGTGTGTGGAATAGATGGAGAACTTACAAAAGTGATCAAGACAAGGGTGAAGATGGAGGAGGAAAGAATGAGTTGCATTCCAACTCATATGAAGTTGCAAAAGATGGAAAGTGAGACTGATTGCAAAAGTGAAAGAGAGTGTTATGCCTGCTTCTACGACTTATATCTATCTTCAACCTCATGCAAGTGTTCTCCTGATCGGTATTCATGTCTTAAGCATGCTAGTAACTTTTGCTCGTGTCCAGTAGGTGAGAGGTGTGTGCTCTTTCGCTATAGTATAAATGATTTACACACACTTGTCGGAGCATTAGAAGGGGGATTAGATCCAATTAAAGAATGGGCCTCAAGCTACTGTAAAATGGAGAAGGATGATGAGTCTGTAGCTAAGGTGGAGTTGGGCAGCAGATTGATTGAAAAACCATCTTGGTCCCCAAAAATAATGGATAAGCTAAAAAGAACAGACGTCCCATGCAGTTCATCTAGTCATGCTTCTTCAGAAGTAGTGCAGTCACAGTCTCATCGTGGATCACTTAGCTTAAATACTTCCCACCATAGTTCAGATAGTCAGAATGACATTGTGAATAGTGAAGTCATGGTGATAAACAAATACAATAAAGTGGGGCAGGAGTGCTGCATTGATTTGAATGTTGATATAGTTTCTGATGAGAACGGTAGTTGTGGGCTCCACGAATCTGATAGTAAGATAATCGTTGATTTGAAGGAAACTTATCCTTCAGTGTTTGAAGAAAAATACATTTGTAAAGCAGCACATGAATCAGAGTCGGTGGAAATGGATATTGATCGTGTAAACACCCCTCCGGTTAATTATTACTCTTCAAGTGTTAAAGATGGTGCGAGAACAAGCGGATCCAATGGTAGTAAGTTGTTTGGAGTCGATCTTTCACAGTCGCAGTCTGCCTTTTCATCCAACCATGCCTCAAAAGTAGAAACTCTAAAACACTTGGATAAAAGGATACCATCTGGGCCAAGTTCTCCTTGCAAATTGGTTCCTTTTATTGAACCTATAAATATTGGAACAGTTATGTTTGGAAAGCCTTGGCACTGCGAGGAGGCCATATTTCCCAAAGGTTTTAGAAGCCGAGTTAAATTCTTTAGTGTGATTAATCCAACTAGTATTGTTACCTACACATCAGAAGTTCTTGATGCTGGGCTCCTGGGACCTCTATTCAAGGTGACCTTGGAAGAATCCCCCGGTGAAAACTTCACTAATACCTCAGCAACCAAATGCTGGGACATGGTGGTACAGAGAATAAACCAAGAAATCGAGAGACAGAACCTTAGATTGGGAGGAACACTTCCTTTGCATCTTTTGAAGGAAGTTAATGGATTGGAAATGTTTGGATTTCTTTCACCTCATGTTATTCAGGCGATTGAGGCTCTTGATCCTAATCACCGGTGTAGGGAGTATTGGAACCACCGGCATCATGCAGTACCCTCAAATTCAGGTGACAACACTAACTGCAAAAATTCTGCTTTAAGATTAAATTTCTCTCGGGGCGAAACAAGTGCAACTACTTTTGATATCAATAGGGAAGAGGATGAAAATGTCAATGCAACTATAGCAGTGCAAGGGCATCATCAAAGTGAAGAATTTCGGTCAGTATTAAAGGGGCTGTTGAATAAAGCAAGTCCTGAAGAATTGAGCGTGCTGCGGAGCATATTCTGCACAGAATTGCAAACACCTGAATTGAGAGCAGAATTTGCAGCACTGATCAAAGAGAAACAGGAAAAGTGTAGATAG 3180 41.6 MDQIKLRADSEAKGDHSSKSSHKSSQTAERLGSPQHQKISARWEPDEACRPLIDEAPVFYPTVEEFEDTLGYIAKIRPQAESYGICRIVPPSSWNPPCVLKEKCKWENAMFSTRIQQVDLLQNREPMRKKSRGRKRKRRKHSKAGTSARISNLGVEANATSESDEKFGFNSGSDFTLKDFQAYADYFKECYFGLNQGREDLNLDIESSKRQEPSVEDIEGEYWRIVEKSTDEVEVYYGADIESGTFSSGFPKASSLVTEGSSDPYVKSGWNLNNLPRLPGSVLCFEESDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYVHWGDPKVWYGVPGSHASSLEAAMKKHLPDLFEEQPDLLHELVTQLSPSVLKSEGVPVYRVIQNAREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLIHGQNAVELYSAQRHRTSLSHDKLLFGSALEAAKALWEMLVLEKRTPINLHWKSVCGIDGELTKVIKTRVKMEEERMSCIPTHMKLQKMESETDCKSERECYACFYDLYLSSTSCKCSPDRYSCLKHASNFCSCPVGERCVLFRYSINDLHTLVGALEGGLDPIKEWASSYCKMEKDDESVAKVELGSRLIEKPSWSPKIMDKLKRTDVPCSSSSHASSEVVQSQSHRGSLSLNTSHHSSDSQNDIVNSEVMVINKYNKVGQECCIDLNVDIVSDENGSCGLHESDSKIIVDLKETYPSVFEEKYICKAAHESESVEMDIDRVNTPPVNYYSSSVKDGARTSGSNGSKLFGVDLSQSQSAFSSNHASKVETLKHLDKRIPSGPSSPCKLVPFIEPINIGTVMFGKPWHCEEAIFPKGFRSRVKFFSVINPTSIVTYTSEVLDAGLLGPLFKVTLEESPGENFTNTSATKCWDMVVQRINQEIERQNLRLGGTLPLHLLKEVNGLEMFGFLSPHVIQAIEALDPNHRCREYWNHRHHAVPSNSGDNTNCKNSALRLNFSRGETSATTFDINREEDENVNATIAVQGHHQSEEFRSVLKGLLNKASPEELSVLRSIFCTELQTPELRAEFAALIKEKQEKCR 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3572938 3581261 - Cp4.1LG20g05870.1 Cpe20g00587 487216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00587 1059 Pfam C5HC2 zinc finger 520 571 IPR004198 -
Cpe20g00587 1059 SUPERFAMILY Clavaminate synthase-like 265 458 - -
Cpe20g00587 1059 Gene3D - 812 947 - -
Cpe20g00587 1059 SMART fyrn_3 818 862 IPR003888 GO:0005634
Cpe20g00587 1059 Coils Coil 1051 1059 - -
Cpe20g00587 1059 ProSiteProfiles FYR domain FYRN motif profile. 804 862 IPR003888 GO:0005634
Cpe20g00587 1059 MobiDBLite consensus disorder prediction 1 42 - -
Cpe20g00587 1059 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Cpe20g00587 1059 Gene3D Cupin 41 414 - -
Cpe20g00587 1059 SMART JmjN_1 55 96 IPR003349 -
Cpe20g00587 1059 MobiDBLite consensus disorder prediction 1 23 - -
Cpe20g00587 1059 Pfam F/Y rich C-terminus 866 955 IPR003889 GO:0005634
Cpe20g00587 1059 SMART fyrc_3 868 960 IPR003889 GO:0005634
Cpe20g00587 1059 MobiDBLite consensus disorder prediction 128 145 - -
Cpe20g00587 1059 PANTHER LYSINE-SPECIFIC DEMETHYLASE 13 1056 - -
Cpe20g00587 1059 Pfam F/Y-rich N-terminus 815 859 IPR003888 GO:0005634
Cpe20g00587 1059 Pfam jmjN domain 57 90 IPR003349 -
Cpe20g00587 1059 MobiDBLite consensus disorder prediction 627 663 - -
Cpe20g00587 1059 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Cpe20g00587 1059 ProSiteProfiles FYR domain FYRC motif profile. 864 954 IPR003889 GO:0005634
Cpe20g00587 1059 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Cpe20g00587 1059 MobiDBLite consensus disorder prediction 122 146 - -
Cpe20g00587 1059 SMART cupin_9 264 430 IPR003347 -
Cpe20g00587 1059 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 13 1056 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00704 Cpe20g00587 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00798 Cpe-Chr7:7116516 Cpe20g00587 Cpe-Chr20:3572938 0 dispersed
Cpe11g00682 Cpe-Chr11:4718880 Cpe20g00587 Cpe-Chr20:3572938 1.21E-41 dispersed
Cpe13g00159 Cpe-Chr13:1169524 Cpe20g00587 Cpe-Chr20:3572938 5.21E-14 dispersed
Cpe17g00909 Cpe-Chr17:7033221 Cpe20g00587 Cpe-Chr20:3572938 1.49E-136 dispersed
Cpe20g00334 Cpe-Chr20:1874271 Cpe20g00587 Cpe-Chr20:3572938 5.36E-53 dispersed
Cpe20g00587 Cpe-Chr20:3572938 Cpe09g00704 Cpe-Chr9:6265837 5.24E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51144 PF02373 JmjC 5.90E-45 CL0029 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00587 - - csv:101214856 1786.16