Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe20g00593 | ATGAAGACAGAGAATGGGCTGAGAAAACAAGGGGGCGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGGTGCGGCGAGGAATGCGTATTCGCGCCATACTTCCCCGCGGACCAACCCCATAAGTTCGCCAATGTCCACAAGGTCTTCGGCGCTAGCAACGTCAACAAAATGCTCCAGGAGTTGCCACTTCACCAGCGAGGAGATGCAGTGAGCAGTTTAGTATATGAAGCGAACGCTAGAGTGCGCGACCCGGTCTATGGGTGTGTGGGAGCGATATCGTCTCTACAGCAGCAGATAGACAGCCTCCAAACTCAGCTGGCTCTGGCTCAAGCTGAGGTTGTGCACCTAAGGGTGCGACAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAGGTAACAGTGGGTCACCCTCATCCAGGCTCATGGGCTCACAATCCTCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGGGACTCAGTGTGGTGA | 522 | 55.17 | MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 3637867 | 3640065 | + | Cp4.1LG20g05910.1 | Cpe20g00593 | 487222 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe20g00593 | 173 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 3 | 8 | 163 | - | - | |
Cpe20g00593 | 173 | Coils | Coil | 96 | 123 | - | - | |
Cpe20g00593 | 173 | MobiDBLite | consensus disorder prediction | 131 | 154 | - | - | |
Cpe20g00593 | 173 | MobiDBLite | consensus disorder prediction | 131 | 153 | - | - | |
Cpe20g00593 | 173 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 8 | 163 | - | - | |
Cpe20g00593 | 173 | Pfam | Lateral organ boundaries (LOB) domain | 17 | 114 | IPR004883 | - | |
Cpe20g00593 | 173 | ProSiteProfiles | LOB domain profile. | 16 | 117 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00107 | Cpe-Chr1:624799 | Cpe20g00593 | Cpe-Chr20:3637867 | 1.37E-25 | dispersed | |
Cpe05g01559 | Cpe-Chr5:10711597 | Cpe20g00593 | Cpe-Chr20:3637867 | 1.17E-66 | dispersed | |
Cpe20g00593 | Cpe-Chr20:3637867 | Cpe20g00754 | Cpe-Chr20:6701146 | 1.01E-50 | dispersed | |
Cpe20g00593 | Cpe-Chr20:3637867 | Cpe04g00856 | Cpe-Chr4:7887266 | 1.51E-61 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51145 | PF03195 | LOB | 2.00E-43 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe20g00593 | - | - | csv:101202930 | 300.056 |