Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00593 ATGAAGACAGAGAATGGGCTGAGAAAACAAGGGGGCGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGGTGCGGCGAGGAATGCGTATTCGCGCCATACTTCCCCGCGGACCAACCCCATAAGTTCGCCAATGTCCACAAGGTCTTCGGCGCTAGCAACGTCAACAAAATGCTCCAGGAGTTGCCACTTCACCAGCGAGGAGATGCAGTGAGCAGTTTAGTATATGAAGCGAACGCTAGAGTGCGCGACCCGGTCTATGGGTGTGTGGGAGCGATATCGTCTCTACAGCAGCAGATAGACAGCCTCCAAACTCAGCTGGCTCTGGCTCAAGCTGAGGTTGTGCACCTAAGGGTGCGACAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAGGTAACAGTGGGTCACCCTCATCCAGGCTCATGGGCTCACAATCCTCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGGGACTCAGTGTGGTGA 522 55.17 MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3637867 3640065 + Cp4.1LG20g05910.1 Cpe20g00593 487222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00593 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 8 163 - -
Cpe20g00593 173 Coils Coil 96 123 - -
Cpe20g00593 173 MobiDBLite consensus disorder prediction 131 154 - -
Cpe20g00593 173 MobiDBLite consensus disorder prediction 131 153 - -
Cpe20g00593 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 163 - -
Cpe20g00593 173 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Cpe20g00593 173 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00107 Cpe-Chr1:624799 Cpe20g00593 Cpe-Chr20:3637867 1.37E-25 dispersed
Cpe05g01559 Cpe-Chr5:10711597 Cpe20g00593 Cpe-Chr20:3637867 1.17E-66 dispersed
Cpe20g00593 Cpe-Chr20:3637867 Cpe20g00754 Cpe-Chr20:6701146 1.01E-50 dispersed
Cpe20g00593 Cpe-Chr20:3637867 Cpe04g00856 Cpe-Chr4:7887266 1.51E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51145 PF03195 LOB 2.00E-43 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00593 - - csv:101202930 300.056