Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00593 ATGAAGACAGAGAATGGGCTGAGAAAACAAGGGGGCGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGGTGCGGCGAGGAATGCGTATTCGCGCCATACTTCCCCGCGGACCAACCCCATAAGTTCGCCAATGTCCACAAGGTCTTCGGCGCTAGCAACGTCAACAAAATGCTCCAGGAGTTGCCACTTCACCAGCGAGGAGATGCAGTGAGCAGTTTAGTATATGAAGCGAACGCTAGAGTGCGCGACCCGGTCTATGGGTGTGTGGGAGCGATATCGTCTCTACAGCAGCAGATAGACAGCCTCCAAACTCAGCTGGCTCTGGCTCAAGCTGAGGTTGTGCACCTAAGGGTGCGACAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAGGTAACAGTGGGTCACCCTCATCCAGGCTCATGGGCTCACAATCCTCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGGGACTCAGTGTGGTGA 522 55.17 MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3637867 3640065 + Cp4.1LG20g05910.1 Cpe20g00593 487222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00593 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 8 163 - -
Cpe20g00593 173 Coils Coil 96 123 - -
Cpe20g00593 173 MobiDBLite consensus disorder prediction 131 154 - -
Cpe20g00593 173 MobiDBLite consensus disorder prediction 131 153 - -
Cpe20g00593 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 163 - -
Cpe20g00593 173 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Cpe20g00593 173 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00593 - - - csv:101202930 300.056
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00107 Cpe-Chr1:624799 Cpe20g00593 Cpe-Chr20:3637867 1.37E-25 dispersed
Cpe05g01559 Cpe-Chr5:10711597 Cpe20g00593 Cpe-Chr20:3637867 1.17E-66 dispersed
Cpe20g00593 Cpe-Chr20:3637867 Cpe20g00754 Cpe-Chr20:6701146 1.01E-50 dispersed
Cpe20g00593 Cpe-Chr20:3637867 Cpe04g00856 Cpe-Chr4:7887266 1.51E-61 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe11g00664 . 1 185 AS2 family AT1G65620 68.3 2.3e-60 229.2
Cpe05g01077 . 2 110 AS2 family AT1G65620 83.5 1.2e-48 190.3
Cpe16g00033 . 2 110 AS2 family AT1G65620 82.6 4.5e-48 188.3
Cpe18g00859 CCT,CST,ECH 17 156 AS2 family AT1G65620 60.7 4.7e-45 178.3
Cpe04g01574 CCT,CST,ECH 4 116 AS2 family AT1G65620 74.3 1.0e-44 177.2
Cpe01g02332 . 5 122 AS2 family AT1G65620 68.6 5.7e-43 171.4
Cpe04g00534 . 3 113 AS2 family AT1G65620 69.4 1.1e-41 167.2
Cpe20g00259 CCT,CST,ECH 13 117 AS2 family AT1G65620 70.5 1.5e-38 156.8
Cpe01g02505 . 9 130 AS2 family AT1G65620 58.2 3.6e-37 152.1
Cpe13g01047 CCT,ECH 36 144 AS2 family AT1G65620 64.2 6.2e-37 151.4
Cpe16g00033 . 1 134 AS2 family AT5G66870 81.3 2.6e-58 223.0
Cpe05g01077 . 1 122 AS2 family AT5G66870 85.2 4.2e-56 215.7
Cpe11g00664 . 5 112 AS2 family AT5G66870 77.8 4.8e-44 175.6
Cpe04g01574 CCT,CST,ECH 4 116 AS2 family AT5G66870 68.1 7.1e-40 161.8
Cpe18g00859 CCT,CST,ECH 15 127 AS2 family AT5G66870 69.0 7.1e-40 161.8
Cpe01g02332 . 5 120 AS2 family AT5G66870 63.8 5.1e-38 155.6
Cpe04g00534 . 7 113 AS2 family AT5G66870 67.3 1.1e-37 154.5
Cpe20g00259 CCT,CST,ECH 13 136 AS2 family AT5G66870 61.3 1.9e-37 153.7
Cpe01g02505 . 9 117 AS2 family AT5G66870 64.2 5.7e-37 152.1
Cpe05g00986 . 1 118 AS2 family AT5G66870 56.8 2.2e-36 150.2
Cpe16g00033 . 4 118 AS2 family AT2G23660 70.4 2.1e-44 176.8
Cpe05g01077 . 4 129 AS2 family AT2G23660 66.7 6.2e-44 175.3
Cpe11g00664 . 6 112 AS2 family AT2G23660 69.2 5.4e-40 162.2
Cpe04g01574 CCT,CST,ECH 11 116 AS2 family AT2G23660 64.2 6.0e-39 158.7
Cpe18g00859 CCT,CST,ECH 22 127 AS2 family AT2G23660 65.1 6.0e-39 158.7
Cpe01g02332 . 9 119 AS2 family AT3G27650 86.5 2.6e-54 208.8
Cpe04g00534 . 4 114 AS2 family AT3G27650 82.9 2.3e-50 195.7
Cpe18g00859 CCT,CST,ECH 7 128 AS2 family AT3G27650 76.2 4.3e-49 191.4
Cpe04g01574 CCT,CST,ECH 7 117 AS2 family AT3G27650 77.5 8.1e-48 187.2
Cpe11g00664 . 3 112 AS2 family AT3G27650 68.2 3.9e-42 168.3
Cpe20g00259 CCT,CST,ECH 8 118 AS2 family AT3G27650 70.3 5.1e-42 167.9
Cpe16g00033 . 4 112 AS2 family AT3G27650 67.9 2.8e-40 162.2
Cpe05g01077 . 4 112 AS2 family AT3G27650 67.9 4.8e-40 161.4
Cpe04g01574 CCT,CST,ECH 6 175 AS2 family AT5G63090 66.9 1.0e-57 220.3
Cpe18g00859 CCT,CST,ECH 17 145 AS2 family AT5G63090 82.7 3.8e-57 218.4
Cpe01g02332 . 5 118 AS2 family AT5G63090 84.2 9.1e-51 197.2
Cpe04g00534 . 2 116 AS2 family AT5G63090 80.9 3.5e-50 195.3
Cpe20g00259 CCT,CST,ECH 4 117 AS2 family AT5G63090 78.1 8.6e-49 190.7
Cpe11g00664 . 3 134 AS2 family AT5G63090 65.7 1.4e-46 183.3
Cpe16g00033 . 2 110 AS2 family AT5G63090 70.6 1.1e-40 163.7
Cpe05g01077 . 2 110 AS2 family AT5G63090 70.6 1.5e-40 163.3
Cpe20g00593 . 16 143 AS2 family AT5G63090 60.2 8.0e-39 157.5
Cpe05g01559 . 12 152 AS2 family AT5G63090 55.6 1.4e-38 156.8
Cpe05g00986 . 5 119 AS2 family AT5G63090 63.5 1.8e-38 156.4
Cpe04g00856 . 16 141 AS2 family AT5G63090 58.7 2.3e-38 156.0
Cpe01g01020 . 4 106 AS2 family AT5G63090 69.9 1.5e-37 153.3
Cpe01g01020 . 3 114 AS2 family AT2G30130 92.0 3.1e-54 208.8
Cpe05g00986 . 2 138 AS2 family AT2G30130 72.3 1.1e-51 200.3
Cpe20g00593 . 11 131 AS2 family AT2G30130 68.6 2.7e-45 179.1
Cpe05g01559 . 12 118 AS2 family AT2G30130 75.7 5.0e-44 174.9
Cpe04g00856 . 16 122 AS2 family AT2G30130 71.0 8.9e-41 164.1
Cpe13g00820 . 22 130 AS2 family AT2G30130 67.0 2.4e-38 156.0
Cpe05g00866 . 34 162 AS2 family AT2G30130 60.5 7.0e-38 154.5
Cpe04g01574 CCT,CST,ECH 11 151 AS2 family AT2G30130 55.3 1.2e-37 153.7
Cpe18g00859 CCT,CST,ECH 22 125 AS2 family AT2G30130 68.3 1.2e-37 153.7
Cpe01g00996 CCT,ECH 48 150 AS2 family AT2G30130 69.9 1.6e-37 153.3
Cpe02g01297 . 33 138 AS2 family AT2G30130 63.2 1.3e-36 150.2
Cpe11g00664 . 7 109 AS2 family AT2G30130 67.0 1.3e-36 150.2
Cpe20g00593 . 13 173 AS2 family AT1G31320 74.1 7.1e-66 247.3
Cpe05g01559 . 1 164 AS2 family AT1G31320 72.5 1.8e-61 232.6
Cpe04g00856 . 5 124 AS2 family AT1G31320 69.2 1.1e-45 180.3
Cpe01g01020 . 2 122 AS2 family AT1G31320 68.3 3.4e-44 175.3
Cpe05g00986 . 6 122 AS2 family AT1G31320 66.7 2.7e-41 165.6
Cpe01g00996 CCT,ECH 48 160 AS2 family AT1G31320 63.7 6.3e-38 154.5
Cpe05g00866 . 34 143 AS2 family AT1G31320 68.2 1.1e-37 153.7
Cpe13g00820 . 22 131 AS2 family AT1G31320 64.5 5.3e-37 151.4
Cpe18g00859 CCT,CST,ECH 23 134 AS2 family AT1G31320 62.5 9.1e-37 150.6
Cpe04g01574 CCT,CST,ECH 12 114 AS2 family AT1G31320 67.0 1.2e-36 150.2
Cpe02g01297 . 30 148 AS2 family AT2G28500 76.5 1.1e-48 190.7
Cpe05g00866 . 30 195 AS2 family AT2G28500 55.7 5.8e-47 184.9
Cpe13g00820 . 20 137 AS2 family AT2G28500 70.3 2.7e-44 176.0
Cpe16g00556 . 31 125 AS2 family AT2G28500 85.3 9.7e-42 167.5
Cpe01g00236 . 37 129 AS2 family AT2G28500 87.1 1.6e-41 166.8
Cpe01g01139 . 54 145 AS2 family AT2G28500 84.8 6.3e-41 164.9
Cpe20g00754 . 32 123 AS2 family AT2G28500 78.3 4.5e-39 158.7
Cpe05g00986 . 6 116 AS2 family AT2G28500 66.7 7.7e-39 157.9
Cpe01g01020 . 5 113 AS2 family AT2G28500 66.1 9.4e-37 151.0
Cpe02g01297 . 30 148 AS2 family AT1G07900 71.4 1.7e-44 176.4
Cpe01g00236 . 16 192 AS2 family AT1G07900 63.2 3.8e-44 175.3
Cpe16g00556 . 31 196 AS2 family AT1G07900 64.7 2.5e-43 172.6
Cpe05g00866 . 4 195 AS2 family AT1G07900 54.4 3.2e-43 172.2
Cpe01g01139 . 54 208 AS2 family AT1G07900 66.9 5.5e-43 171.4
Cpe20g00754 . 19 196 AS2 family AT1G07900 60.2 7.2e-43 171.0
Cpe13g00820 . 20 183 AS2 family AT1G07900 53.0 8.8e-41 164.1
Cpe05g01559 . 1 164 AS2 family AT1G16530 56.9 6.0e-46 181.0
Cpe04g00856 . 16 143 AS2 family AT1G16530 62.0 1.2e-41 166.8
Cpe20g00593 . 12 121 AS2 family AT1G16530 69.4 9.9e-41 163.7
Cpe05g00986 . 2 159 AS2 family AT1G16530 52.8 4.2e-39 158.3
Cpe01g01020 . 5 110 AS2 family AT1G16530 68.2 3.0e-37 152.1
Cpe01g00996 CCT,ECH 1 157 AS2 family AT2G30340 67.7 4.7e-56 215.3
Cpe13g01047 CCT,ECH 20 148 AS2 family AT2G30340 76.3 9.8e-54 207.6
Cpe01g00091 . 1 104 AS2 family AT2G30340 74.0 2.3e-42 169.9
Cpe05g01559 . 9 126 AS2 family AT2G30340 60.2 4.9e-37 152.1
Cpe13g01047 CCT,ECH 25 160 AS2 family AT2G40470 80.0 9.8e-59 223.8
Cpe01g00996 CCT,ECH 32 157 AS2 family AT2G40470 84.9 7.0e-57 217.6
Cpe01g00091 . 1 104 AS2 family AT2G40470 81.7 6.1e-45 177.9
Cpe05g01559 . 9 129 AS2 family AT2G40470 62.0 1.6e-40 163.3
Cpe20g00593 . 17 127 AS2 family AT2G40470 63.1 9.5e-38 154.1
Cpe04g00856 . 16 124 AS2 family AT2G40470 62.4 1.6e-37 153.3
Cpe05g00986 . 6 122 AS2 family AT2G40470 59.8 2.8e-37 152.5
Cpe01g02505 . 1 124 AS2 family AT3G11090 76.6 3.8e-48 188.3
Cpe05g00056 CCT 1 113 AS2 family AT2G42440 77.9 3.1e-46 182.6
Cpe15g00070 CCT 1 115 AS2 family AT2G42440 72.2 3.2e-43 172.6
Cpe17g00315 . 33 144 AS2 family AT2G42440 63.8 5.2e-38 155.2
Cpe12g00024 . 28 137 AS2 family AT2G42440 63.4 9.8e-37 151.0
Cpe05g00056 CCT 4 117 AS2 family AT3G58190 79.8 1.3e-48 190.3
Cpe15g00070 CCT 4 113 AS2 family AT3G58190 78.2 1.4e-45 180.3
Cpe17g00315 . 33 135 AS2 family AT3G58190 74.8 1.3e-40 163.7
Cpe12g00024 . 28 126 AS2 family AT3G58190 73.7 1.9e-39 159.8
Cpe03g01684 . 27 146 AS2 family AT3G58190 63.3 4.7e-38 155.2
Cpe05g00055 CCT 24 127 AS2 family AT3G58190 68.3 4.7e-38 155.2
Cpe05g00056 CCT 1 142 AS2 family AT2G31310 60.4 3.3e-40 162.2
Cpe05g00055 CCT 24 196 AS2 family AT2G42430 50.9 1.2e-47 187.2
Cpe17g00315 . 33 135 AS2 family AT2G42430 76.7 3.0e-41 166.0
Cpe12g00024 . 28 130 AS2 family AT2G42430 72.8 9.6e-40 161.0
Cpe05g00056 CCT 3 109 AS2 family AT2G42430 72.0 2.8e-39 159.5
Cpe03g01684 . 25 142 AS2 family AT2G42430 62.7 6.2e-39 158.3
Cpe15g00070 CCT 3 94 AS2 family AT2G42430 79.3 1.1e-38 157.5
Cpe08g00686 . 39 155 AS2 family AT2G42430 63.2 1.3e-36 150.6
Cpe12g00024 . 28 216 AS2 family AT4G00220 61.9 1.0e-59 227.3
Cpe17g00315 . 33 251 AS2 family AT4G00220 55.9 2.8e-57 219.2
Cpe03g01684 . 23 198 AS2 family AT4G00220 50.8 2.5e-42 169.5
Cpe12g00025 . 11 194 AS2 family AT4G00220 55.3 2.1e-41 166.4
Cpe12g00024 . 28 231 AS2 family AT2G45420 64.3 8.6e-71 264.2
Cpe17g00315 . 33 248 AS2 family AT2G45420 67.9 7.3e-70 261.2
Cpe03g01684 . 35 191 AS2 family AT2G45420 60.0 3.5e-48 189.1
Cpe12g00025 . 11 99 AS2 family AT2G45420 83.1 2.7e-40 162.9
Cpe05g00055 CCT 24 129 AS2 family AT2G45420 71.7 4.6e-40 162.2
Cpe08g00686 . 40 146 AS2 family AT2G45420 71.0 2.5e-38 156.4
Cpe05g00056 CCT 7 97 AS2 family AT2G45420 76.9 2.1e-37 153.3
Cpe15g00070 CCT 7 95 AS2 family AT2G45420 77.5 1.1e-36 151.0
Cpe08g00686 . 10 153 AS2 family AT3G03760 70.9 2.1e-48 189.9
Cpe17g00315 . 33 134 AS2 family AT3G03760 82.4 2.5e-41 166.4
Cpe12g00024 . 28 129 AS2 family AT3G03760 78.4 1.1e-39 161.0
Cpe12g00024 . 28 160 AS2 family AT4G00210 63.9 3.4e-44 175.6
Cpe17g00315 . 33 144 AS2 family AT4G00210 72.3 1.7e-43 173.3
Cpe03g01684 . 28 137 AS2 family AT4G00210 68.2 2.7e-41 166.0
Cpe12g00024 . 28 218 AS2 family AT2G45410 50.3 4.5e-45 178.3
Cpe17g00315 . 33 138 AS2 family AT2G45410 73.6 1.7e-44 176.4
Cpe03g01684 . 23 137 AS2 family AT2G45410 65.2 2.3e-41 166.0
Cpe01g00170 CCT 16 155 AS2 family AT5G06080 60.0 1.3e-43 173.3
Cpe01g01080 CCT 24 127 AS2 family AT5G06080 73.1 4.1e-40 161.8
Cpe12g00616 . 22 145 AS2 family AT3G13850 66.9 4.5e-43 172.2
Cpe17g00481 . 41 149 AS2 family AT3G13850 72.5 2.5e-41 166.4
Cpe03g00701 CCT,ECH 1 162 AS2 family AT1G68510 65.9 3.9e-59 225.3
Cpe02g01431 CCT,ECH 1 162 AS2 family AT1G68510 63.5 1.6e-57 219.9
Cpe04g01407 CCT,ECH 67 227 AS2 family AT1G68510 60.5 8.5e-54 207.6
Cpe18g00757 CCT,ECH 58 197 AS2 family AT1G68510 68.3 1.1e-53 207.2
Cpe09g00304 . 1 154 AS2 family AT1G68510 59.9 9.7e-50 194.1
Cpe19g00663 . 1 104 AS2 family AT1G68510 62.5 7.7e-39 157.9
Cpe06g00193 CCT,ECH 1 104 AS2 family AT1G68510 64.4 1.6e-36 150.2
Cpe02g01431 CCT,ECH 1 286 AS2 family AT1G67100 50.9 4.2e-69 258.5
Cpe18g00757 CCT,ECH 58 206 AS2 family AT1G67100 69.5 4.6e-60 228.4
Cpe04g01407 CCT,ECH 67 200 AS2 family AT1G67100 73.5 5.1e-59 224.9
Cpe09g00304 . 1 131 AS2 family AT1G67100 66.9 1.3e-49 193.7
Cpe19g00663 . 1 110 AS2 family AT1G67100 66.4 3.6e-44 175.6
Cpe02g00212 CCT,ECH 1 104 AS2 family AT1G67100 65.4 8.5e-38 154.5
Cpe06g00193 CCT,ECH 1 110 AS2 family AT1G67100 60.9 1.1e-37 154.1
Cpe03g00701 CCT,ECH 1 283 AS2 family AT3G02550 58.1 2.9e-79 292.4
Cpe02g01431 CCT,ECH 1 285 AS2 family AT3G02550 58.9 6.6e-79 291.2
Cpe04g01407 CCT,ECH 67 301 AS2 family AT3G02550 52.9 5.1e-63 238.4
Cpe18g00757 CCT,ECH 58 209 AS2 family AT3G02550 70.4 6.2e-61 231.5
Cpe09g00304 . 1 138 AS2 family AT3G02550 65.7 7.1e-49 191.4
Cpe19g00663 . 1 104 AS2 family AT3G02550 68.3 1.7e-39 160.2
Cpe19g00663 . 1 203 AS2 family AT5G67420 64.6 1.1e-72 270.4
Cpe02g00212 CCT,ECH 1 153 AS2 family AT5G67420 58.9 1.3e-44 177.2
Cpe02g01431 CCT,ECH 3 122 AS2 family AT5G67420 64.2 5.0e-44 175.3
Cpe03g00701 CCT,ECH 3 112 AS2 family AT5G67420 67.3 5.0e-44 175.3
Cpe06g00193 CCT,ECH 1 148 AS2 family AT5G67420 56.8 1.5e-43 173.7
Cpe18g00757 CCT,ECH 60 169 AS2 family AT5G67420 62.7 1.2e-40 164.1
Cpe04g01407 CCT,ECH 69 172 AS2 family AT5G67420 64.4 2.2e-39 159.8
Cpe09g00304 . 3 106 AS2 family AT5G67420 63.5 2.4e-38 156.4
Cpe19g00663 . 1 233 AS2 family AT3G49940 60.0 1.2e-71 266.9
Cpe02g00212 CCT,ECH 1 133 AS2 family AT3G49940 64.2 1.2e-45 180.6
Cpe02g01431 CCT,ECH 3 157 AS2 family AT3G49940 54.7 3.4e-45 179.1
Cpe06g00193 CCT,ECH 1 127 AS2 family AT3G49940 64.1 4.9e-44 175.3
Cpe03g00701 CCT,ECH 3 157 AS2 family AT3G49940 52.2 6.4e-44 174.9
Cpe18g00757 CCT,ECH 60 169 AS2 family AT3G49940 61.8 4.3e-40 162.2
Cpe04g01407 CCT,ECH 69 178 AS2 family AT3G49940 60.0 1.1e-38 157.5
Cpe09g00304 . 3 106 AS2 family AT3G49940 66.3 1.1e-38 157.5
Cpe19g00663 . 1 234 AS2 family AT4G37540 55.2 2.9e-65 245.7
Cpe06g00193 CCT,ECH 1 134 AS2 family AT4G37540 62.7 2.8e-44 176.0
Cpe03g00701 CCT,ECH 3 165 AS2 family AT4G37540 52.1 2.9e-41 166.0
Cpe18g00757 CCT,ECH 60 170 AS2 family AT4G37540 62.2 1.6e-39 160.2
Cpe04g01407 CCT,ECH 69 179 AS2 family AT4G37540 60.4 3.0e-38 156.0
Cpe09g00304 . 3 125 AS2 family AT4G37540 56.9 2.0e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000955 1 3 2 2 2 3 4 3 3 3 3 3 3 4 3 3 3 2 3 3 3 2 3 3 3 3 3 3 3 2 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51145 PF03195 LOB 2.00E-43 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00593 Cpe_Chr20 FPKM 2.18107 1.543947 5.144128 4.220494 4.632919 9.554449 3.699418 3.792857 3.141946 2.483481