Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00609 ATGGCTGCAAAAGATGCAGAGAAAGTCTTGGACGTGCAGTCGGTCGTTGAAGCAGTAGTTGCAGACGAAGACGCCGATGTTCCTCGCTACGAAGTAGAAAGCCTTTGCATGCGCTGTCACGAAAACGGGACAACAAGATTTTTGTTAACTTTAATTCCGAACTTCAGAAAGATCTTATTGTCGGCCTTTGAGTGTCCACATTGTGGTGAGAGGAACAATGAAGTCCAGTTTGCTGGTGAGATCCAGCCACGAGGCTGTTGCTACTCTTTGGAGGTTCATGCTGGCGACCAGAAGACGCTCAATCGACAAGTGGTGAAATCTGAATCTGCCATTATTAAGATCCCTGAATTGGATTTCGAGATTCCAGCCGAGGCTCAACGTGGAACTCTATCAACCGTGGAAGGTATATTGGTACGAGCCATAGATGGATTGGAATCCCTTCAAGAGGAACGTAGGAAGGTGGATCCTCAGACTGCTGAAGCAATAGATAAGTTTCTCCTGAAACTGAAAGCATGTGCCATAGGAGATTCATCTTTCTCCTTCATCTTGGATGATCCAGCTGGAAACAGCTTCATTGAGAACCCATTTGCACCATCCAAAGATCCATCATTAAGTATCAAGTTTTATGAGCGGAGTCCAGAACAACAAGCATCATTGGGTTATTACGTTGAATCATCCCAATCTGAAGAAGCTGAGGGTGGAGTATCAACAAGTGGAGTTGATGCTTCTAATCAAGTTAGAGGAGAGGCACATGGATCTGTAGGAGCAGCGGCTGGCCATCGGGCAATAGCTCAAAGTAACAGTGCAGAGATTGCTGAGGCCTTGTTTCGTTACACTGCACCAGAAGAAGTGATGACTTTCCCATCTACATGTGGAGCTTGTGCAGTTGGGTGTGAGACTCGAATGTTTGTAACTAAAATTCCCTACTTCCAAGAAGTGATTGTCATGGCAACTACTTGTGATGCTTGTGGTTACCGTAGTTCTGAGCTGAAGCCTGGTGGGCGAATCCCTGAAAAAGGAAAGATAATTAGTCTTTGTGTAAAGAATGTTAAAGATCTCAGTCGAGATTTGATAAAGTCAGATACTGCAAGTGTGAAAGTCCCAGATCTTGACTTGGAGCTGACTAGTGGCACTCTTGGGGGAATTGTTACCACTGTTGAAGGTTTAATCACAAAGATAAGTGAAAGTCTAGAGAGAGTGCATGGATTTACTTTTGGAGACAGTCTTGATGAAAATAAAAGAAACAAGTGGCTGGACTTCAAAACAAGACTAACCAAGCTCTTGAGTTTGGAACAGCCTTGGACTCTAATCCTTGATGATGCATTAGCAAACTCGTTTATTGCACCAGTGACCGATGATATCAAAGATGACCATCAGTTAACATATGAGGAATACGAACGGTCCTGGGAACAGAATGAGGAACTCGGTTTGAACGACATGGACACCTCATCTGCTGATGCTGCTTACACGTAA 1473 44.2 MAAKDAEKVLDVQSVVEAVVADEDADVPRYEVESLCMRCHENGTTRFLLTLIPNFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYSLEVHAGDQKTLNRQVVKSESAIIKIPELDFEIPAEAQRGTLSTVEGILVRAIDGLESLQEERRKVDPQTAEAIDKFLLKLKACAIGDSSFSFILDDPAGNSFIENPFAPSKDPSLSIKFYERSPEQQASLGYYVESSQSEEAEGGVSTSGVDASNQVRGEAHGSVGAAAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACAVGCETRMFVTKIPYFQEVIVMATTCDACGYRSSELKPGGRIPEKGKIISLCVKNVKDLSRDLIKSDTASVKVPDLDLELTSGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDENKRNKWLDFKTRLTKLLSLEQPWTLILDDALANSFIAPVTDDIKDDHQLTYEEYERSWEQNEELGLNDMDTSSADAAYT 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3753664 3770839 + Cp4.1LG20g06060.1 Cpe20g00609 487238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00609 490 PANTHER ZINC FINGER PROTEIN ZPR1 3 489 IPR040141 -
Cpe20g00609 490 Pfam ZPR1 zinc-finger domain 34 193 IPR004457 GO:0008270
Cpe20g00609 490 Pfam ZPR1 zinc-finger domain 289 447 IPR004457 GO:0008270
Cpe20g00609 490 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 36 218 IPR004457 GO:0008270
Cpe20g00609 490 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 290 481 IPR004457 GO:0008270
Cpe20g00609 490 Gene3D ZPR1, zinc finger domain 27 79 IPR042452 -
Cpe20g00609 490 Gene3D ZPR1, zinc finger domain 279 334 IPR042452 -
Cpe20g00609 490 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 3 489 - -
Cpe20g00609 490 SMART zpr1 289 449 IPR004457 GO:0008270
Cpe20g00609 490 SMART zpr1 34 194 IPR004457 GO:0008270
Cpe20g00609 490 Gene3D ZPR1, A/B domain 335 477 IPR042451 -
Cpe20g00609 490 Gene3D ZPR1, A/B domain 80 221 IPR042451 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00609 Cpe-Chr20:3753664 Cpe09g00689 Cpe-Chr9:6041769 7.18E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00609 K06874 - csv:101208000 891.723