Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00649 ATGACAAGAAAGAAGGTGAAGCTGACATACATAACAAATGATGCAGCAAGAAAAGCCACATTCAAGAAGAGGAAGAAGGGCTTAATGAAGAAGCTCACCGAGCTCACCACACTCTGCGGGATCGAGGCGTGCGCCATAATTTTCAGTCCCTTCAATTCTCAACCCGATCTCTGGCCCTCTATTGTCGGGCTCGAGAGGGTTCTCGCTAAGTTCAAAAGTCTATCGGAGATGGAACAATGCAATAAGATGGTGAACCAAGAGACCTTCCTTCGTGACCGCATAGCTAAAGCGACTGACCAACTCAAGAAGTTGCAAAGGGAGAATCGCGAGAAGGAGATCACAAGACTCATGTTTGAAAGCCTCGTGGCTGGAGCGACTCCGCCACGAGATCTCAATATCATTGATTTGTATGATCTTGTGTGGTTGGTTGATGAGACAATGACTGATGTTTGTAAAAGGATTGAGTTGCTTACGACAACTATGACCGAACCGCCAGTCGTGTCGGCGGTCGAGCCGTCGTGGTTCATGGAGATGATGAGTCATGGAGCCTATGATGATCAAATGGGATTCAAGATTTGGGATGATGTGATTCAACTTCCAAATGATGATAACCATGGTGCATTTTGGTCAAACAATGGCTCTCCTTGA 648 46.3 MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPSIVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFESLVAGATPPRDLNIIDLYDLVWLVDETMTDVCKRIELLTTTMTEPPVVSAVEPSWFMEMMSHGAYDDQMGFKIWDDVIQLPNDDNHGAFWSNNGSP 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4126525 4127172 + Cp4.1LG20g06440.1 Cpe20g00649 487278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00649 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe20g00649 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe20g00649 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe20g00649 215 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cpe20g00649 215 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cpe20g00649 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 163 - -
Cpe20g00649 215 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 163 - -
Cpe20g00649 215 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Cpe20g00649 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe20g00649 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Cpe20g00649 215 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cpe20g00649 215 Coils Coil 87 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00209 Cpe-Chr4:2178725 Cpe20g00649 Cpe-Chr20:4126525 9.70E-66 dispersed
Cpe08g00958 Cpe-Chr8:7533995 Cpe20g00649 Cpe-Chr20:4126525 1.12E-34 dispersed
Cpe09g00664 Cpe-Chr9:5459370 Cpe20g00649 Cpe-Chr20:4126525 5.21E-97 dispersed
Cpe20g00649 Cpe-Chr20:4126525 Cpe10g00528 Cpe-Chr10:3096610 1.06E-12 dispersed
Cpe20g00649 Cpe-Chr20:4126525 Cpe05g01055 Cpe-Chr5:6984166 8.19E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51149 PF00319 SRF-TF 1.30E-17 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00649 - - csv:101219796 319.701